RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 USP31Q70CQ4 1352 aa10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 SPATA31A5Q5VU36 1347 aa10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 SPATA31A7Q8IWB4 1347 aa10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 EVA1CP58658 441 aa10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 CDCA8Q53HL2 280 aa10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 SEPT12Q8IYM1 358 aa10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 AXIN2Q9Y2T1 843 aa10.68□□□□□ -0.7
HMGB3P1-201ENST00000393368 FBLN1P23142 703 aa10.67□□□□□ -0.7
HMGB3P1-201ENST00000393368 ARHGEF25Q86VW2 580 aa10.67□□□□□ -0.7
HMGB3P1-201ENST00000393368 KCNH5Q8NCM2 988 aa10.67□□□□□ -0.7
HMGB3P1-201ENST00000393368 UPF1Q92900 1129 aaKnown RBP eCLIP10.67□□□□□ -0.7
HMGB3P1-201ENST00000393368 CARD14Q9BXL6 1004 aa10.67□□□□□ -0.7
HMGB3P1-201ENST00000393368 GGNBP2Q9H3C7 697 aa10.67□□□□□ -0.7
HMGB3P1-201ENST00000393368 NSD3Q9BZ95 1437 aa10.67□□□□□ -0.7
HMGB3P1-201ENST00000393368 SPATA31A1Q5TZJ5 1347 aa10.66□□□□□ -0.7
HMGB3P1-201ENST00000393368 EP400Q96L91 3159 aa10.66□□□□□ -0.7
HMGB3P1-201ENST00000393368 USP54Q70EL1 1684 aa10.66□□□□□ -0.7
HMGB3P1-201ENST00000393368 AATKQ6ZMQ8 1374 aa10.65□□□□□ -0.7
HMGB3P1-201ENST00000393368 FAM182BQ5T319 152 aa10.65□□□□□ -0.7
HMGB3P1-201ENST00000393368 COL18A1P39060 1754 aa10.65□□□□□ -0.71
HMGB3P1-201ENST00000393368 FYB1O15117 783 aa10.64□□□□□ -0.71
HMGB3P1-201ENST00000393368 COG3Q96JB2 828 aa10.64□□□□□ -0.71
HMGB3P1-201ENST00000393368 THSD7AQ9UPZ6 1657 aa10.63□□□□□ -0.71
HMGB3P1-201ENST00000393368 ONECUT3O60422 494 aaPredicted RBP10.63□□□□□ -0.71
HMGB3P1-201ENST00000393368 TOM1L2Q6ZVM7 507 aa10.63□□□□□ -0.71
HMGB3P1-201ENST00000393368 RNF39Q9H2S5 420 aa10.63□□□□□ -0.71
HMGB3P1-201ENST00000393368 BRWD3Q6RI45 1802 aa10.63□□□□□ -0.71
HMGB3P1-201ENST00000393368 KIF7Q2M1P5 1343 aa10.62□□□□□ -0.71
HMGB3P1-201ENST00000393368 CRB1P82279 1406 aa10.62□□□□□ -0.71
HMGB3P1-201ENST00000393368 CSB-PGBD3P0DP91 1061 aa10.62□□□□□ -0.71
HMGB3P1-201ENST00000393368 RRS1Q15050 365 aaKnown RBP10.62□□□□□ -0.71
HMGB3P1-201ENST00000393368 KRT27Q7Z3Y8 459 aa10.62□□□□□ -0.71
HMGB3P1-201ENST00000393368 PANK3Q9H999 370 aa10.62□□□□□ -0.71
HMGB3P1-201ENST00000393368 WDR17Q8IZU2 1322 aa10.61□□□□□ -0.71
HMGB3P1-201ENST00000393368 TCP11L2Q8N4U5 519 aa10.61□□□□□ -0.71
HMGB3P1-201ENST00000393368 LTV1Q96GA3 475 aaPredicted RBP10.61□□□□□ -0.71
HMGB3P1-201ENST00000393368 LTN1O94822 1766 aa10.61□□□□□ -0.71
HMGB3P1-201ENST00000393368 RGPD5Q99666 1765 aa10.61□□□□□ -0.71
HMGB3P1-201ENST00000393368 KIF20BQ96Q89 1820 aa10.61□□□□□ -0.71
HMGB3P1-201ENST00000393368 MAP3K19Q56UN5 1328 aa10.6□□□□□ -0.71
HMGB3P1-201ENST00000393368 ANKRD24Q8TF21 1146 aa10.6□□□□□ -0.71
HMGB3P1-201ENST00000393368 ERBB3P21860 1342 aa10.59□□□□□ -0.71
HMGB3P1-201ENST00000393368 BARGINQ6ZT62 677 aa10.59□□□□□ -0.71
HMGB3P1-201ENST00000393368 ABCC6O95255 1503 aa10.58□□□□□ -0.72
HMGB3P1-201ENST00000393368 HOXC9P31274 260 aa10.58□□□□□ -0.72
HMGB3P1-201ENST00000393368 TNNT2P45379 298 aaPredicted RBP10.58□□□□□ -0.72
HMGB3P1-201ENST00000393368 AMPHP49418 695 aa10.58□□□□□ -0.72
HMGB3P1-201ENST00000393368 IP6K1Q92551 441 aa10.58□□□□□ -0.72
HMGB3P1-201ENST00000393368 NLRP2Q9NX02 1062 aa10.58□□□□□ -0.72
HMGB3P1-201ENST00000393368 CGNL1Q0VF96 1302 aa10.58□□□□□ -0.72
HMGB3P1-201ENST00000393368 WASHC2AQ641Q2 1341 aa10.58□□□□□ -0.72
HMGB3P1-201ENST00000393368 CCDC7Q96M83 1385 aa10.57□□□□□ -0.72
HMGB3P1-201ENST00000393368 CARD10Q9BWT7 1032 aa10.57□□□□□ -0.72
HMGB3P1-201ENST00000393368 THRAP3Q9Y2W1 955 aaKnown RBP10.57□□□□□ -0.72
HMGB3P1-201ENST00000393368 EMILIN1Q9Y6C2 1016 aa10.57□□□□□ -0.72
HMGB3P1-201ENST00000393368 PEAK1Q9H792 1746 aa10.57□□□□□ -0.72
HMGB3P1-201ENST00000393368 LRRC37A3O60309 1634 aa10.57□□□□□ -0.72
HMGB3P1-201ENST00000393368 BLMP54132 1417 aaPredicted RBP10.57□□□□□ -0.72
HMGB3P1-201ENST00000393368 PDE3BQ13370 1112 aa10.56□□□□□ -0.72
HMGB3P1-201ENST00000393368 DISP2A7MBM2 1401 aa10.56□□□□□ -0.72
HMGB3P1-201ENST00000393368 PPM1GO15355 546 aaPredicted RBP10.55□□□□□ -0.72
HMGB3P1-201ENST00000393368 CNGB1Q14028 1251 aaPredicted RBP10.55□□□□□ -0.72
HMGB3P1-201ENST00000393368 HSP90AB2PQ58FF8 381 aa10.55□□□□□ -0.72
HMGB3P1-201ENST00000393368 DEFB132Q7Z7B7 95 aa10.55□□□□□ -0.72
HMGB3P1-201ENST00000393368 USHBP1Q8N6Y0 703 aa10.55□□□□□ -0.72
HMGB3P1-201ENST00000393368 WNK3Q9BYP7 1800 aa10.55□□□□□ -0.72
HMGB3P1-201ENST00000393368 PARP4Q9UKK3 1724 aaKnown RBP10.55□□□□□ -0.72
HMGB3P1-201ENST00000393368 RTL1A6NKG5 1358 aa10.54□□□□□ -0.72
HMGB3P1-201ENST00000393368 DDB1Q16531 1140 aa10.54□□□□□ -0.72
HMGB3P1-201ENST00000393368 FLT4P35916 1363 aa10.53□□□□□ -0.72
HMGB3P1-201ENST00000393368 TRIM37O94972 964 aa10.53□□□□□ -0.72
HMGB3P1-201ENST00000393368 AMER1Q5JTC6 1135 aaPredicted RBP10.52□□□□□ -0.73
HMGB3P1-201ENST00000393368 NBPF6Q5VWK0 638 aa10.52□□□□□ -0.73
HMGB3P1-201ENST00000393368 MARCH10Q8NA82 808 aaPredicted RBP10.52□□□□□ -0.73
HMGB3P1-201ENST00000393368 NBPF4Q96M43 638 aa10.52□□□□□ -0.73
HMGB3P1-201ENST00000393368 KNSTRNQ9Y448 316 aa10.52□□□□□ -0.73
HMGB3P1-201ENST00000393368 ANKRD26Q9UPS8 1709 aa10.52□□□□□ -0.73
HMGB3P1-201ENST00000393368 INSRP06213 1382 aa10.52□□□□□ -0.73
HMGB3P1-201ENST00000393368 TNS2Q63HR2 1409 aa10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 FAM208AQ9UK61 1670 aaKnown RBP10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 IL2RBP14784 551 aa10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 SF3B2Q13435 895 aaKnown RBP10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 CC2D1BQ5T0F9 858 aaKnown RBP10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 FAM196AQ6ZSG2 479 aa10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 PTF1AQ7RTS3 328 aa10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 MORC1Q86VD1 984 aa10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 POLKQ9UBT6 870 aa10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 MEGF6O75095 1541 aa10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 RGPD2P0DJD1 1756 aa10.51□□□□□ -0.73
HMGB3P1-201ENST00000393368 OVOS2A0A0G2JMS6 1433 aa10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 SMG6Q86US8 1419 aaKnown RBP10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 TNS1Q9HBL0 1735 aaKnown RBP10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 EXOC5O00471 708 aa10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 PER1O15534 1290 aaPredicted RBP10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 CACNB1Q02641 598 aaPredicted RBP10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 EN1Q05925 392 aaPredicted RBP10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 CCDC125Q86Z20 511 aa10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 CDCA7Q9BWT1 371 aaPredicted RBP10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 NSD2O96028 1365 aa10.5□□□□□ -0.73
HMGB3P1-201ENST00000393368 RGPD1P0DJD0 1748 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms