RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 MORC1Q86VD1 984 aa25.6■■□□□ 1.69
SSU72-203ENST00000378725 IP6K1Q92551 441 aa25.6■■□□□ 1.69
SSU72-203ENST00000378725 EVA1CP58658 441 aa25.59■■□□□ 1.69
SSU72-203ENST00000378725 RRS1Q15050 365 aaKnown RBP25.59■■□□□ 1.69
SSU72-203ENST00000378725 NRAPQ86VF7 1730 aa25.58■■□□□ 1.69
SSU72-203ENST00000378725 GJD4Q96KN9 370 aaPredicted RBP25.58■■□□□ 1.69
SSU72-203ENST00000378725 ANKRD26Q9UPS8 1709 aa25.57■■□□□ 1.68
SSU72-203ENST00000378725 RXRBP28702 533 aa25.57■■□□□ 1.68
SSU72-203ENST00000378725 RBM6P78332 1123 aaKnown RBP25.57■■□□□ 1.68
SSU72-203ENST00000378725 CC2D1BQ5T0F9 858 aaKnown RBP25.57■■□□□ 1.68
SSU72-203ENST00000378725 COL5A2P05997 1499 aaPredicted RBP25.57■■□□□ 1.68
SSU72-203ENST00000378725 AMPHP49418 695 aa25.56■■□□□ 1.68
SSU72-203ENST00000378725 STRN4Q9NRL3 753 aa25.56■■□□□ 1.68
SSU72-203ENST00000378725 KIF24Q5T7B8 1368 aa25.56■■□□□ 1.68
SSU72-203ENST00000378725 HOXC9P31274 260 aa25.55■■□□□ 1.68
SSU72-203ENST00000378725 POLKQ9UBT6 870 aa25.55■■□□□ 1.68
SSU72-203ENST00000378725 TNNT2P45379 298 aaPredicted RBP25.54■■□□□ 1.68
SSU72-203ENST00000378725 LARP1Q6PKG0 1096 aaKnown RBP25.54■■□□□ 1.68
SSU72-203ENST00000378725 SPATA31A5Q5VU36 1347 aa25.54■■□□□ 1.68
SSU72-203ENST00000378725 SPATA31A7Q8IWB4 1347 aa25.54■■□□□ 1.68
SSU72-203ENST00000378725 RTL1A6NKG5 1358 aa25.54■■□□□ 1.68
SSU72-203ENST00000378725 LTN1O94822 1766 aa25.54■■□□□ 1.68
SSU72-203ENST00000378725 BLMP54132 1417 aaPredicted RBP25.54■■□□□ 1.68
SSU72-203ENST00000378725 EMILIN1Q9Y6C2 1016 aa25.53■■□□□ 1.68
SSU72-203ENST00000378725 CCDC9Q9Y3X0 531 aaKnown RBP25.51■■□□□ 1.67
SSU72-203ENST00000378725 SPATA31A1Q5TZJ5 1347 aa25.51■■□□□ 1.67
SSU72-203ENST00000378725 WDR17Q8IZU2 1322 aa25.51■■□□□ 1.67
SSU72-203ENST00000378725 ERBB3P21860 1342 aa25.5■■□□□ 1.67
SSU72-203ENST00000378725 FLT4P35916 1363 aa25.49■■□□□ 1.67
SSU72-203ENST00000378725 ONECUT3O60422 494 aaPredicted RBP25.49■■□□□ 1.67
SSU72-203ENST00000378725 ANKRD24Q8TF21 1146 aa25.49■■□□□ 1.67
SSU72-203ENST00000378725 CRB1P82279 1406 aa25.48■■□□□ 1.67
SSU72-203ENST00000378725 INSRP06213 1382 aa25.48■■□□□ 1.67
SSU72-203ENST00000378725 HSP90AB2PQ58FF8 381 aa25.48■■□□□ 1.67
SSU72-203ENST00000378725 GLI3P10071 1580 aa25.48■■□□□ 1.67
SSU72-203ENST00000378725 TOM1L2Q6ZVM7 507 aa25.47■■□□□ 1.67
SSU72-203ENST00000378725 CDK12Q9NYV4 1490 aaPredicted RBP25.47■■□□□ 1.67
SSU72-203ENST00000378725 SMG6Q86US8 1419 aaKnown RBP25.46■■□□□ 1.67
SSU72-203ENST00000378725 RGPD5Q99666 1765 aa25.46■■□□□ 1.67
SSU72-203ENST00000378725 PEAK1Q9H792 1746 aa25.46■■□□□ 1.67
SSU72-203ENST00000378725 PPM1GO15355 546 aaPredicted RBP25.46■■□□□ 1.67
SSU72-203ENST00000378725 CSB-PGBD3P0DP91 1061 aa25.46■■□□□ 1.67
SSU72-203ENST00000378725 ILDR2Q71H61 639 aa25.46■■□□□ 1.67
SSU72-203ENST00000378725 CNGB1Q14028 1251 aaPredicted RBP25.45■■□□□ 1.66
SSU72-203ENST00000378725 CARD10Q9BWT7 1032 aa25.45■■□□□ 1.66
SSU72-203ENST00000378725 THRAP3Q9Y2W1 955 aaKnown RBP25.45■■□□□ 1.66
SSU72-203ENST00000378725 BARGINQ6ZT62 677 aa25.44■■□□□ 1.66
SSU72-203ENST00000378725 TCP11L2Q8N4U5 519 aa25.44■■□□□ 1.66
SSU72-203ENST00000378725 MAP2P11137 1827 aaKnown RBP25.44■■□□□ 1.66
SSU72-203ENST00000378725 LTV1Q96GA3 475 aaPredicted RBP25.43■■□□□ 1.66
SSU72-203ENST00000378725 USP35Q9P2H5 1018 aa25.42■■□□□ 1.66
SSU72-203ENST00000378725 MTHFSP49914 203 aa25.41■■□□□ 1.66
SSU72-203ENST00000378725 FAM98CQ17RN3 349 aaKnown RBP25.41■■□□□ 1.66
SSU72-203ENST00000378725 NLRP2Q9NX02 1062 aa25.4■■□□□ 1.66
SSU72-203ENST00000378725 RGS12O14924 1447 aa25.39■■□□□ 1.66
SSU72-203ENST00000378725 PARD3Q8TEW0 1356 aa25.39■■□□□ 1.65
SSU72-203ENST00000378725 SEPT12Q8IYM1 358 aa25.38■■□□□ 1.65
SSU72-203ENST00000378725 PPP2R1AP30153 589 aa25.36■■□□□ 1.65
SSU72-203ENST00000378725 EIF4A2Q14240 407 aaKnown RBP25.36■■□□□ 1.65
SSU72-203ENST00000378725 RALBP1Q15311 655 aa25.36■■□□□ 1.65
SSU72-203ENST00000378725 NBPF6Q5VWK0 638 aa25.36■■□□□ 1.65
SSU72-203ENST00000378725 NBPF4Q96M43 638 aa25.36■■□□□ 1.65
SSU72-203ENST00000378725 CDCA7Q9BWT1 371 aaPredicted RBP25.34■■□□□ 1.65
SSU72-203ENST00000378725 FAM208AQ9UK61 1670 aaKnown RBP25.32■■□□□ 1.64
SSU72-203ENST00000378725 THSD7AQ9UPZ6 1657 aa25.32■■□□□ 1.64
SSU72-203ENST00000378725 DISP2A7MBM2 1401 aa25.31■■□□□ 1.64
SSU72-203ENST00000378725 IL13P35225 146 aa25.31■■□□□ 1.64
SSU72-203ENST00000378725 EYA1Q99502 592 aa25.31■■□□□ 1.64
SSU72-203ENST00000378725 NCAPD2Q15021 1401 aa25.29■■□□□ 1.64
SSU72-203ENST00000378725 A0A0G2JS52 829 aa25.28■■□□□ 1.64
SSU72-203ENST00000378725 IL2RBP14784 551 aa25.28■■□□□ 1.64
SSU72-203ENST00000378725 MYT1Q01538 1121 aa25.28■■□□□ 1.64
SSU72-203ENST00000378725 USHBP1Q8N6Y0 703 aa25.27■■□□□ 1.64
SSU72-203ENST00000378725 PRKRIP1Q9H875 184 aaPredicted RBP25.27■■□□□ 1.64
SSU72-203ENST00000378725 DIAPH1O60610 1272 aaKnown RBP25.26■■□□□ 1.63
SSU72-203ENST00000378725 KRT27Q7Z3Y8 459 aa25.26■■□□□ 1.63
SSU72-203ENST00000378725 IGSF1Q8N6C5 1336 aa25.26■■□□□ 1.63
SSU72-203ENST00000378725 COL3A1P02461 1466 aaPredicted RBP25.25■■□□□ 1.63
SSU72-203ENST00000378725 RGPD2P0DJD1 1756 aa25.25■■□□□ 1.63
SSU72-203ENST00000378725 DDB1Q16531 1140 aa25.24■■□□□ 1.63
SSU72-203ENST00000378725 CFAP53Q96M91 514 aa25.24■■□□□ 1.63
SSU72-203ENST00000378725 MYBBP1AQ9BQG0 1328 aaKnown RBP25.23■■□□□ 1.63
SSU72-203ENST00000378725 EXOC5O00471 708 aa25.23■■□□□ 1.63
SSU72-203ENST00000378725 PARP4Q9UKK3 1724 aaKnown RBP25.23■■□□□ 1.63
SSU72-203ENST00000378725 PDE3BQ13370 1112 aa25.22■■□□□ 1.63
SSU72-203ENST00000378725 WNK3Q9BYP7 1800 aa25.21■■□□□ 1.63
SSU72-203ENST00000378725 RAPGEF4Q8WZA2 1011 aa25.2■■□□□ 1.62
SSU72-203ENST00000378725 BRWD3Q6RI45 1802 aa25.2■■□□□ 1.62
SSU72-203ENST00000378725 MEGF6O75095 1541 aa25.19■■□□□ 1.62
SSU72-203ENST00000378725 TATP17735 454 aaPredicted RBP25.19■■□□□ 1.62
SSU72-203ENST00000378725 LRRC37A3O60309 1634 aa25.18■■□□□ 1.62
SSU72-203ENST00000378725 OVOS2A0A0G2JMS6 1433 aa25.18■■□□□ 1.62
SSU72-203ENST00000378725 RGPD1P0DJD0 1748 aa25.17■■□□□ 1.62
SSU72-203ENST00000378725 SULT6B1Q6IMI4 303 aa25.17■■□□□ 1.62
SSU72-203ENST00000378725 KDRP35968 1356 aa25.17■■□□□ 1.62
SSU72-203ENST00000378725 TNS2Q63HR2 1409 aa25.16■■□□□ 1.62
SSU72-203ENST00000378725 MARCH10Q8NA82 808 aaPredicted RBP25.16■■□□□ 1.62
SSU72-203ENST00000378725 ZCRB1Q8TBF4 217 aaKnown RBP25.16■■□□□ 1.62
SSU72-203ENST00000378725 AEBP1Q8IUX7 1158 aa25.15■■□□□ 1.62
SSU72-203ENST00000378725 NUDCQ9Y266 331 aa25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms