RNA–Protein interactions for RNA: ENST00000378034.7

CKAP2-202, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-202ENST00000378034 EVA1CP58658 441 aa18.1■□□□□ 0.49
CKAP2-202ENST00000378034 GJD4Q96KN9 370 aaPredicted RBP18.1■□□□□ 0.49
CKAP2-202ENST00000378034 COL5A2P05997 1499 aaPredicted RBP18.1■□□□□ 0.49
CKAP2-202ENST00000378034 CDK12Q9NYV4 1490 aaPredicted RBP18.09■□□□□ 0.49
CKAP2-202ENST00000378034 KIF24Q5T7B8 1368 aa18.09■□□□□ 0.49
CKAP2-202ENST00000378034 MAP3K19Q56UN5 1328 aa18.09■□□□□ 0.49
CKAP2-202ENST00000378034 BLMP54132 1417 aaPredicted RBP18.09■□□□□ 0.49
CKAP2-202ENST00000378034 RTL1A6NKG5 1358 aa18.08■□□□□ 0.49
CKAP2-202ENST00000378034 IP6K1Q92551 441 aa18.08■□□□□ 0.49
CKAP2-202ENST00000378034 AXIN2Q9Y2T1 843 aa18.08■□□□□ 0.49
CKAP2-202ENST00000378034 RGPD5Q99666 1765 aa18.08■□□□□ 0.48
CKAP2-202ENST00000378034 MORC1Q86VD1 984 aa18.08■□□□□ 0.48
CKAP2-202ENST00000378034 STRN4Q9NRL3 753 aa18.08■□□□□ 0.48
CKAP2-202ENST00000378034 CCDC9Q9Y3X0 531 aaKnown RBP18.07■□□□□ 0.48
CKAP2-202ENST00000378034 SPATA31A5Q5VU36 1347 aa18.06■□□□□ 0.48
CKAP2-202ENST00000378034 SPATA31A7Q8IWB4 1347 aa18.06■□□□□ 0.48
CKAP2-202ENST00000378034 AMPHP49418 695 aa18.06■□□□□ 0.48
CKAP2-202ENST00000378034 GLI3P10071 1580 aa18.06■□□□□ 0.48
CKAP2-202ENST00000378034 FBLN1P23142 703 aa18.06■□□□□ 0.48
CKAP2-202ENST00000378034 MAP2P11137 1827 aaKnown RBP18.05■□□□□ 0.48
CKAP2-202ENST00000378034 WDR17Q8IZU2 1322 aa18.05■□□□□ 0.48
CKAP2-202ENST00000378034 RRS1Q15050 365 aaKnown RBP18.05■□□□□ 0.48
CKAP2-202ENST00000378034 CRB1P82279 1406 aa18.04■□□□□ 0.48
CKAP2-202ENST00000378034 HOXC9P31274 260 aa18.04■□□□□ 0.48
CKAP2-202ENST00000378034 LARP1Q6PKG0 1096 aaKnown RBP18.04■□□□□ 0.48
CKAP2-202ENST00000378034 SPATA31A1Q5TZJ5 1347 aa18.04■□□□□ 0.48
CKAP2-202ENST00000378034 ZNF316A6NFI3 1004 aaPredicted RBP18.04■□□□□ 0.48
CKAP2-202ENST00000378034 FLT4P35916 1363 aa18.04■□□□□ 0.48
CKAP2-202ENST00000378034 ERBB3P21860 1342 aa18.03■□□□□ 0.48
CKAP2-202ENST00000378034 ONECUT3O60422 494 aaPredicted RBP18.02■□□□□ 0.48
CKAP2-202ENST00000378034 ILDR2Q71H61 639 aa18.02■□□□□ 0.48
CKAP2-202ENST00000378034 POLKQ9UBT6 870 aa18.02■□□□□ 0.48
CKAP2-202ENST00000378034 THRAP3Q9Y2W1 955 aaKnown RBP18.02■□□□□ 0.48
CKAP2-202ENST00000378034 FAM208AQ9UK61 1670 aaKnown RBP18.02■□□□□ 0.48
CKAP2-202ENST00000378034 CSB-PGBD3P0DP91 1061 aa18.02■□□□□ 0.47
CKAP2-202ENST00000378034 CC2D1BQ5T0F9 858 aaKnown RBP18.02■□□□□ 0.47
CKAP2-202ENST00000378034 PEAK1Q9H792 1746 aa18.02■□□□□ 0.47
CKAP2-202ENST00000378034 INSRP06213 1382 aa18.01■□□□□ 0.47
CKAP2-202ENST00000378034 TNNT2P45379 298 aaPredicted RBP18.01■□□□□ 0.47
CKAP2-202ENST00000378034 TOM1L2Q6ZVM7 507 aa18.01■□□□□ 0.47
CKAP2-202ENST00000378034 ANKRD24Q8TF21 1146 aa18.01■□□□□ 0.47
CKAP2-202ENST00000378034 DDX10Q13206 875 aaKnown RBP18■□□□□ 0.47
CKAP2-202ENST00000378034 CARD10Q9BWT7 1032 aa18■□□□□ 0.47
CKAP2-202ENST00000378034 EMILIN1Q9Y6C2 1016 aa18■□□□□ 0.47
CKAP2-202ENST00000378034 SMG6Q86US8 1419 aaKnown RBP18■□□□□ 0.47
CKAP2-202ENST00000378034 RGS12O14924 1447 aa18■□□□□ 0.47
CKAP2-202ENST00000378034 BARGINQ6ZT62 677 aa18■□□□□ 0.47
CKAP2-202ENST00000378034 TCP11L2Q8N4U5 519 aa18■□□□□ 0.47
CKAP2-202ENST00000378034 PPM1GO15355 546 aaPredicted RBP17.97■□□□□ 0.47
CKAP2-202ENST00000378034 FAM98CQ17RN3 349 aaKnown RBP17.97■□□□□ 0.47
CKAP2-202ENST00000378034 HSP90AB2PQ58FF8 381 aa17.97■□□□□ 0.47
CKAP2-202ENST00000378034 USP35Q9P2H5 1018 aa17.97■□□□□ 0.47
CKAP2-202ENST00000378034 THSD7AQ9UPZ6 1657 aa17.97■□□□□ 0.47
CKAP2-202ENST00000378034 SEPT12Q8IYM1 358 aa17.96■□□□□ 0.47
CKAP2-202ENST00000378034 LTV1Q96GA3 475 aaPredicted RBP17.96■□□□□ 0.47
CKAP2-202ENST00000378034 NLRP2Q9NX02 1062 aa17.96■□□□□ 0.47
CKAP2-202ENST00000378034 CDCA7Q9BWT1 371 aaPredicted RBP17.95■□□□□ 0.46
CKAP2-202ENST00000378034 WNK3Q9BYP7 1800 aa17.94■□□□□ 0.46
CKAP2-202ENST00000378034 PARP4Q9UKK3 1724 aaKnown RBP17.93■□□□□ 0.46
CKAP2-202ENST00000378034 A0A0G2JS52 829 aa17.92■□□□□ 0.46
CKAP2-202ENST00000378034 MTHFSP49914 203 aa17.92■□□□□ 0.46
CKAP2-202ENST00000378034 MYT1Q01538 1121 aa17.92■□□□□ 0.46
CKAP2-202ENST00000378034 CNGB1Q14028 1251 aaPredicted RBP17.92■□□□□ 0.46
CKAP2-202ENST00000378034 BRWD3Q6RI45 1802 aa17.91■□□□□ 0.46
CKAP2-202ENST00000378034 PARD3Q8TEW0 1356 aa17.91■□□□□ 0.46
CKAP2-202ENST00000378034 RGPD2P0DJD1 1756 aa17.91■□□□□ 0.46
CKAP2-202ENST00000378034 DISP2A7MBM2 1401 aa17.91■□□□□ 0.46
CKAP2-202ENST00000378034 RALBP1Q15311 655 aa17.9■□□□□ 0.46
CKAP2-202ENST00000378034 NBPF6Q5VWK0 638 aa17.9■□□□□ 0.46
CKAP2-202ENST00000378034 NBPF4Q96M43 638 aa17.9■□□□□ 0.46
CKAP2-202ENST00000378034 IL2RBP14784 551 aa17.89■□□□□ 0.45
CKAP2-202ENST00000378034 EIF4A2Q14240 407 aaKnown RBP17.89■□□□□ 0.45
CKAP2-202ENST00000378034 KRT27Q7Z3Y8 459 aa17.89■□□□□ 0.45
CKAP2-202ENST00000378034 NCAPD2Q15021 1401 aa17.88■□□□□ 0.45
CKAP2-202ENST00000378034 PPP2R1AP30153 589 aa17.88■□□□□ 0.45
CKAP2-202ENST00000378034 DDB1Q16531 1140 aa17.87■□□□□ 0.45
CKAP2-202ENST00000378034 LRRC37A3O60309 1634 aa17.87■□□□□ 0.45
CKAP2-202ENST00000378034 PDE3BQ13370 1112 aa17.86■□□□□ 0.45
CKAP2-202ENST00000378034 EYA1Q99502 592 aa17.86■□□□□ 0.45
CKAP2-202ENST00000378034 EXOC5O00471 708 aa17.85■□□□□ 0.45
CKAP2-202ENST00000378034 CFAP53Q96M91 514 aa17.85■□□□□ 0.45
CKAP2-202ENST00000378034 IL13P35225 146 aa17.84■□□□□ 0.45
CKAP2-202ENST00000378034 IGSF1Q8N6C5 1336 aa17.84■□□□□ 0.45
CKAP2-202ENST00000378034 SOCS7O14512 581 aa17.84■□□□□ 0.45
CKAP2-202ENST00000378034 DIAPH1O60610 1272 aaKnown RBP17.84■□□□□ 0.45
CKAP2-202ENST00000378034 RAPGEF4Q8WZA2 1011 aa17.84■□□□□ 0.45
CKAP2-202ENST00000378034 PLEKHG2Q9H7P9 1386 aa17.83■□□□□ 0.45
CKAP2-202ENST00000378034 TNS2Q63HR2 1409 aa17.83■□□□□ 0.45
CKAP2-202ENST00000378034 USHBP1Q8N6Y0 703 aa17.83■□□□□ 0.44
CKAP2-202ENST00000378034 COL3A1P02461 1466 aaPredicted RBP17.83■□□□□ 0.44
CKAP2-202ENST00000378034 RGPD1P0DJD0 1748 aa17.83■□□□□ 0.44
CKAP2-202ENST00000378034 TATP17735 454 aaPredicted RBP17.82■□□□□ 0.44
CKAP2-202ENST00000378034 OVOS2A0A0G2JMS6 1433 aa17.81■□□□□ 0.44
CKAP2-202ENST00000378034 MEGF6O75095 1541 aa17.81■□□□□ 0.44
CKAP2-202ENST00000378034 PRKRIP1Q9H875 184 aaPredicted RBP17.8■□□□□ 0.44
CKAP2-202ENST00000378034 MYBBP1AQ9BQG0 1328 aaKnown RBP17.8■□□□□ 0.44
CKAP2-202ENST00000378034 FAM196AQ6ZSG2 479 aa17.8■□□□□ 0.44
CKAP2-202ENST00000378034 ZCRB1Q8TBF4 217 aaKnown RBP17.79■□□□□ 0.44
CKAP2-202ENST00000378034 KDRP35968 1356 aa17.79■□□□□ 0.44
CKAP2-202ENST00000378034 BCL9O00512 1426 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 190.7 ms