RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 PAIP2Q9BPZ3 127 aaKnown RBP9.82□□□□□ -0.84
USP48-203ENST00000374732 MAGEC2Q9UBF1 373 aaPredicted RBP9.82□□□□□ -0.84
USP48-203ENST00000374732 DENND4BO75064 1496 aaPredicted RBP9.82□□□□□ -0.84
USP48-203ENST00000374732 ZNF142P52746 1687 aaPredicted RBP9.82□□□□□ -0.84
USP48-203ENST00000374732 TPM2P07951 284 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 NAP1L1P55209 391 aaKnown RBP9.82□□□□□ -0.84
USP48-203ENST00000374732 MAF1Q9H063 256 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 DMRT2Q9Y5R5 561 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 MYO5CQ9NQX4 1742 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 ERICH4A6NGS2 130 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 HDGFL1Q5TGJ6 251 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 CACTIN-AS1Q8N1I8 211 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 FAM13BQ9NYF5 915 aa9.82□□□□□ -0.84
USP48-203ENST00000374732 CGNQ9P2M7 1197 aaKnown RBP9.82□□□□□ -0.84
USP48-203ENST00000374732 GCC2Q8IWJ2 1684 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 PTPRKQ15262 1439 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 FER1L4A9Z1Z3 1794 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 CARNS1A5YM72 827 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 LETM1O95202 739 aaPredicted RBP9.81□□□□□ -0.84
USP48-203ENST00000374732 MCCD1P59942 119 aaPredicted RBP9.81□□□□□ -0.84
USP48-203ENST00000374732 RBM28Q9NW13 759 aaKnown RBP9.81□□□□□ -0.84
USP48-203ENST00000374732 LMTK3Q96Q04 1460 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 TRAK2O60296 914 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 MICALL1Q8N3F8 863 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 MAP7D2Q96T17 732 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 NRBP1Q9UHY1 535 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 NAIPQ13075 1403 aa9.81□□□□□ -0.84
USP48-203ENST00000374732 SMAPO00193 183 aa9.8□□□□□ -0.84
USP48-203ENST00000374732 MADDQ8WXG6 1647 aa9.8□□□□□ -0.84
USP48-203ENST00000374732 LIG1P18858 919 aa9.8□□□□□ -0.84
USP48-203ENST00000374732 C11orf96Q7Z7L8 435 aa9.8□□□□□ -0.84
USP48-203ENST00000374732 NUP153P49790 1475 aaKnown RBP9.8□□□□□ -0.84
USP48-203ENST00000374732 CAPN15O75808 1086 aa9.8□□□□□ -0.84
USP48-203ENST00000374732 ZRANB2O95218 330 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP48-203ENST00000374732 MIER1Q8N108 512 aa9.8□□□□□ -0.84
USP48-203ENST00000374732 MYCBPQ99417 103 aaPredicted RBP9.8□□□□□ -0.84
USP48-203ENST00000374732 PDZRN3Q9UPQ7 1066 aa9.8□□□□□ -0.84
USP48-203ENST00000374732 CNTLNQ9NXG0 1405 aa9.79□□□□□ -0.84
USP48-203ENST00000374732 CCDC172P0C7W6 258 aa9.79□□□□□ -0.84
USP48-203ENST00000374732 MS4A1P11836 297 aa9.79□□□□□ -0.84
USP48-203ENST00000374732 CAPN2P17655 700 aa9.79□□□□□ -0.84
USP48-203ENST00000374732 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP48-203ENST00000374732 C9orf84Q5VXU9 1444 aa9.79□□□□□ -0.84
USP48-203ENST00000374732 ZSCAN20P17040 1043 aaPredicted RBP9.79□□□□□ -0.84
USP48-203ENST00000374732 LMNB1P20700 586 aa9.79□□□□□ -0.84
USP48-203ENST00000374732 GYS2P54840 703 aa9.79□□□□□ -0.84
USP48-203ENST00000374732 UVSSAQ2YD98 709 aa9.78□□□□□ -0.84
USP48-203ENST00000374732 NPATQ14207 1427 aa9.78□□□□□ -0.84
USP48-203ENST00000374732 MLH3Q9UHC1 1453 aa9.78□□□□□ -0.84
USP48-203ENST00000374732 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP48-203ENST00000374732 CDK13Q14004 1512 aaKnown RBP9.78□□□□□ -0.84
USP48-203ENST00000374732 U2SURPO15042 1029 aaKnown RBP9.78□□□□□ -0.84
USP48-203ENST00000374732 PAX7P23759 505 aa9.78□□□□□ -0.84
USP48-203ENST00000374732 IRF2BPLQ9H1B7 796 aa9.78□□□□□ -0.84
USP48-203ENST00000374732 ANAPC4Q9UJX5 808 aa9.78□□□□□ -0.84
USP48-203ENST00000374732 SMC5Q8IY18 1101 aa9.77□□□□□ -0.84
USP48-203ENST00000374732 GNL3LQ9NVN8 582 aaKnown RBP9.77□□□□□ -0.84
USP48-203ENST00000374732 AMOTL2Q9Y2J4 779 aa9.77□□□□□ -0.84
USP48-203ENST00000374732 PLCH2O75038 1416 aa9.77□□□□□ -0.85
USP48-203ENST00000374732 TTC30AQ86WT1 665 aa9.77□□□□□ -0.85
USP48-203ENST00000374732 DRC1Q96MC2 740 aa9.77□□□□□ -0.85
USP48-203ENST00000374732 ARPC5LQ9BPX5 153 aa9.77□□□□□ -0.85
USP48-203ENST00000374732 CIZ1Q9ULV3 898 aaPredicted RBP9.77□□□□□ -0.85
USP48-203ENST00000374732 CCDC194A0A1B0GVG4 234 aa9.77□□□□□ -0.85
USP48-203ENST00000374732 ARIH1Q9Y4X5 557 aaPredicted RBP9.77□□□□□ -0.85
USP48-203ENST00000374732 ROCK1Q13464 1354 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 CCDC189A1A4V9 331 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 NAT2P11245 290 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 RBM5P52756 815 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP48-203ENST00000374732 GTPBP4Q9BZE4 634 aaKnown RBP9.76□□□□□ -0.85
USP48-203ENST00000374732 CEP126Q9P2H0 1117 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 ATP10AO60312 1499 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 TERF1P54274 439 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 HMGN5P82970 282 aaKnown RBP9.76□□□□□ -0.85
USP48-203ENST00000374732 CCDC85AQ96PX6 553 aaPredicted RBP9.76□□□□□ -0.85
USP48-203ENST00000374732 FAM117AQ9C073 453 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 ISY1Q9ULR0 285 aaKnown RBP9.76□□□□□ -0.85
USP48-203ENST00000374732 ITSN2Q9NZM3 1697 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 PREX2Q70Z35 1606 aa9.76□□□□□ -0.85
USP48-203ENST00000374732 COQ9O75208 318 aa9.75□□□□□ -0.85
USP48-203ENST00000374732 IGHDP01880 384 aa9.75□□□□□ -0.85
USP48-203ENST00000374732 CLCN1P35523 988 aa9.75□□□□□ -0.85
USP48-203ENST00000374732 LRRC27Q9C0I9 530 aa9.75□□□□□ -0.85
USP48-203ENST00000374732 KIF14Q15058 1648 aa9.75□□□□□ -0.85
USP48-203ENST00000374732 RIMS1Q86UR5 1692 aaKnown RBP9.75□□□□□ -0.85
USP48-203ENST00000374732 U2AF1L5P0DN76 240 aaPredicted RBP9.75□□□□□ -0.85
USP48-203ENST00000374732 U2AF1Q01081 240 aaKnown RBP eCLIP9.75□□□□□ -0.852e-6■■□□□ 11.8
USP48-203ENST00000374732 DCAF11Q8TEB1 546 aa9.75□□□□□ -0.85
USP48-203ENST00000374732 DNMT1P26358 1616 aaKnown RBP9.75□□□□□ -0.85
USP48-203ENST00000374732 ZNF518AQ6AHZ1 1483 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 ZNF853P0CG23 659 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 HSCBQ8IWL3 235 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 TMC1Q8TDI8 760 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 KLF15Q9UIH9 416 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 CFAP69A5D8W1 941 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 TRIM6-TRIM34B2RNG4 842 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 PPP1R15AO75807 674 aaPredicted RBP9.74□□□□□ -0.85
USP48-203ENST00000374732 TNNT1P13805 278 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 TRIM34Q9BYJ4 488 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 SUDS3Q9H7L9 328 aaPredicted RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms