RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.36□□□□□ -1.55
MCF2-203ENST00000370576 MAF1Q9H063 256 aa5.36□□□□□ -1.55
MCF2-203ENST00000370576 COL22A1Q8NFW1 1626 aaPredicted RBP5.36□□□□□ -1.55
MCF2-203ENST00000370576 NHSL1Q5SYE7 1610 aa5.36□□□□□ -1.55
MCF2-203ENST00000370576 TPD52L2O43399 206 aaKnown RBP5.36□□□□□ -1.55
MCF2-203ENST00000370576 CLEC4GQ6UXB4 293 aa5.36□□□□□ -1.55
MCF2-203ENST00000370576 SREK1Q8WXA9 508 aaKnown RBP5.36□□□□□ -1.55
MCF2-203ENST00000370576 LRPPRCP42704 1394 aaKnown RBP5.36□□□□□ -1.55
MCF2-203ENST00000370576 KANK1Q14678 1352 aa5.36□□□□□ -1.55
MCF2-203ENST00000370576 IQSEC2Q5JU85 1478 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 RGPD8O14715 1765 aaPredicted RBP5.35□□□□□ -1.55
MCF2-203ENST00000370576 COL18A1P39060 1754 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 SSH2Q76I76 1423 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 WASHC2AQ641Q2 1341 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 WASHC2CQ9Y4E1 1318 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 ATP7BP35670 1465 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 PARD3Q8TEW0 1356 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 PIK3R4Q99570 1358 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 SKIV2LQ15477 1246 aaKnown RBP5.35□□□□□ -1.55
MCF2-203ENST00000370576 TESK2Q96S53 571 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 PLCD4Q9BRC7 762 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 PEAK1Q9H792 1746 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 PARP4Q9UKK3 1724 aaKnown RBP5.35□□□□□ -1.55
MCF2-203ENST00000370576 BLMP54132 1417 aaPredicted RBP5.35□□□□□ -1.55
MCF2-203ENST00000370576 PSME1Q06323 249 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 PLCH1Q4KWH8 1693 aa5.35□□□□□ -1.55
MCF2-203ENST00000370576 CDK12Q9NYV4 1490 aaPredicted RBP5.34□□□□□ -1.55
MCF2-203ENST00000370576 NINLQ9Y2I6 1382 aa5.34□□□□□ -1.55
MCF2-203ENST00000370576 RBM10P98175 930 aaKnown RBP5.34□□□□□ -1.55
MCF2-203ENST00000370576 PLEKHG1Q9ULL1 1385 aa5.34□□□□□ -1.55
MCF2-203ENST00000370576 TSPY4P0CV99 314 aa5.34□□□□□ -1.55
MCF2-203ENST00000370576 TSPY10P0CW01 314 aa5.34□□□□□ -1.55
MCF2-203ENST00000370576 FAM50AQ14320 339 aaKnown RBP5.34□□□□□ -1.55
MCF2-203ENST00000370576 AMHR2Q16671 573 aa5.34□□□□□ -1.55
MCF2-203ENST00000370576 MRRFQ96E11 262 aaKnown RBP5.34□□□□□ -1.55
MCF2-203ENST00000370576 QTRT2Q9H974 415 aaKnown RBP5.34□□□□□ -1.55
MCF2-203ENST00000370576 USTQ9Y2C2 406 aa5.34□□□□□ -1.55
MCF2-203ENST00000370576 NCOA3Q9Y6Q9 1424 aa5.34□□□□□ -1.55
MCF2-203ENST00000370576 TMEM88BA6NKF7 163 aa5.34□□□□□ -1.56
MCF2-203ENST00000370576 APLP1P51693 650 aa5.34□□□□□ -1.56
MCF2-203ENST00000370576 NCAPD2Q15021 1401 aa5.33□□□□□ -1.56
MCF2-203ENST00000370576 PPARGC1BQ86YN6 1023 aaKnown RBP5.33□□□□□ -1.56
MCF2-203ENST00000370576 AFAP1Q8N556 730 aa5.33□□□□□ -1.56
MCF2-203ENST00000370576 PPP4CP60510 307 aa5.33□□□□□ -1.56
MCF2-203ENST00000370576 CACTIN-AS1Q8N1I8 211 aa5.33□□□□□ -1.56
MCF2-203ENST00000370576 SECISBP2LQ93073 1101 aaKnown RBP5.33□□□□□ -1.56
MCF2-203ENST00000370576 L3MBTL2Q969R5 705 aa5.33□□□□□ -1.56
MCF2-203ENST00000370576 TERF2IPQ9NYB0 399 aa5.33□□□□□ -1.56
MCF2-203ENST00000370576 CENPBP07199 599 aaPredicted RBP5.33□□□□□ -1.56
MCF2-203ENST00000370576 HNRNPUL2Q1KMD3 747 aaKnown RBP5.33□□□□□ -1.56
MCF2-203ENST00000370576 RAB11FIP3O75154 756 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 RRP7BPQ9NSQ0 103 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 PLEKHG2Q9H7P9 1386 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 CPSF1Q10570 1443 aaKnown RBP5.32□□□□□ -1.56
MCF2-203ENST00000370576 NKTRP30414 1462 aaKnown RBP5.32□□□□□ -1.56
MCF2-203ENST00000370576 SLIT3O75094 1523 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 EGFLAMQ63HQ2 1017 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 MICAL1Q8TDZ2 1067 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 CCER2I3L3R5 266 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 NPAS4Q8IUM7 802 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 FBXO41Q8TF61 875 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 UBXN4Q92575 508 aa5.32□□□□□ -1.56
MCF2-203ENST00000370576 ABCC11Q96J66 1382 aa5.31□□□□□ -1.56
MCF2-203ENST00000370576 PAPPAQ13219 1627 aa5.31□□□□□ -1.56
MCF2-203ENST00000370576 SHANK3Q9BYB0 1731 aa5.31□□□□□ -1.56
MCF2-203ENST00000370576 SMC5Q8IY18 1101 aa5.31□□□□□ -1.56
MCF2-203ENST00000370576 C14orf93Q9H972 538 aaKnown RBP5.31□□□□□ -1.56
MCF2-203ENST00000370576 COG6Q9Y2V7 657 aa5.31□□□□□ -1.56
MCF2-203ENST00000370576 TONSLQ96HA7 1378 aa5.31□□□□□ -1.56
MCF2-203ENST00000370576 USP47Q96K76 1375 aa5.31□□□□□ -1.56
MCF2-203ENST00000370576 YTHDC2Q9H6S0 1430 aaKnown RBP5.31□□□□□ -1.56
MCF2-203ENST00000370576 CFAP65Q6ZU64 1925 aaKnown RBP5.31□□□□□ -1.56
MCF2-203ENST00000370576 DLG5Q8TDM6 1919 aa5.31□□□□□ -1.56
MCF2-203ENST00000370576 EXOC5O00471 708 aa5.3□□□□□ -1.56
MCF2-203ENST00000370576 SIN3AQ96ST3 1273 aa5.3□□□□□ -1.56
MCF2-203ENST00000370576 PKD1L3Q7Z443 1732 aa5.3□□□□□ -1.56
MCF2-203ENST00000370576 ZNF831Q5JPB2 1677 aa5.3□□□□□ -1.56
MCF2-203ENST00000370576 PER1O15534 1290 aaPredicted RBP5.3□□□□□ -1.56
MCF2-203ENST00000370576 UBA5Q9GZZ9 404 aa5.3□□□□□ -1.56
MCF2-203ENST00000370576 A0A0U1RQG5 324 aaPredicted RBP5.3□□□□□ -1.56
MCF2-203ENST00000370576 CCER1Q8TC90 406 aaPredicted RBP5.3□□□□□ -1.56
MCF2-203ENST00000370576 DDRGK1Q96HY6 314 aa5.3□□□□□ -1.56
MCF2-203ENST00000370576 PARNO95453 639 aaKnown RBP5.29□□□□□ -1.56
MCF2-203ENST00000370576 ZNF16P17020 682 aaPredicted RBP5.29□□□□□ -1.56
MCF2-203ENST00000370576 SDR16C5Q8N3Y7 309 aa5.29□□□□□ -1.56
MCF2-203ENST00000370576 ANKARQ7Z5J8 1434 aa5.29□□□□□ -1.56
MCF2-203ENST00000370576 PTPRUQ92729 1446 aa5.29□□□□□ -1.56
MCF2-203ENST00000370576 LTN1O94822 1766 aa5.29□□□□□ -1.56
MCF2-203ENST00000370576 BRD4O60885 1362 aaPredicted RBP5.29□□□□□ -1.56
MCF2-203ENST00000370576 ZMYM3Q14202 1370 aa5.29□□□□□ -1.56
MCF2-203ENST00000370576 ANKRD62A6NC57 917 aa5.29□□□□□ -1.56
MCF2-203ENST00000370576 APBB1IPQ7Z5R6 666 aaPredicted RBP5.29□□□□□ -1.56
MCF2-203ENST00000370576 MAP2P11137 1827 aaKnown RBP5.28□□□□□ -1.56
MCF2-203ENST00000370576 IVNS1ABPQ9Y6Y0 642 aa5.28□□□□□ -1.56
MCF2-203ENST00000370576 ERCC3P19447 782 aa5.28□□□□□ -1.56
MCF2-203ENST00000370576 LDLRAD1Q5T700 205 aa5.28□□□□□ -1.56
MCF2-203ENST00000370576 CCDC181Q5TID7 509 aa5.28□□□□□ -1.56
MCF2-203ENST00000370576 NOL8Q76FK4 1167 aaKnown RBP5.28□□□□□ -1.56
MCF2-203ENST00000370576 DCCP43146 1447 aa5.28□□□□□ -1.56
MCF2-203ENST00000370576 NSD2O96028 1365 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms