RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 STRN4Q9NRL3 753 aa20.78■□□□□ 0.92
SMPDL3A-201ENST00000368440 CGNL1Q0VF96 1302 aa20.78■□□□□ 0.92
SMPDL3A-201ENST00000368440 AXIN2Q9Y2T1 843 aa20.77■□□□□ 0.92
SMPDL3A-201ENST00000368440 ABCC6O95255 1503 aa20.77■□□□□ 0.92
SMPDL3A-201ENST00000368440 CDK12Q9NYV4 1490 aaPredicted RBP20.77■□□□□ 0.91
SMPDL3A-201ENST00000368440 CCDC9Q9Y3X0 531 aaKnown RBP20.76■□□□□ 0.91
SMPDL3A-201ENST00000368440 LARP1Q6PKG0 1096 aaKnown RBP20.73■□□□□ 0.91
SMPDL3A-201ENST00000368440 PEAK1Q9H792 1746 aa20.73■□□□□ 0.91
SMPDL3A-201ENST00000368440 SPATA31A5Q5VU36 1347 aa20.73■□□□□ 0.91
SMPDL3A-201ENST00000368440 SPATA31A7Q8IWB4 1347 aa20.73■□□□□ 0.91
SMPDL3A-201ENST00000368440 EVA1CP58658 441 aa20.73■□□□□ 0.91
SMPDL3A-201ENST00000368440 MAP3K19Q56UN5 1328 aa20.72■□□□□ 0.91
SMPDL3A-201ENST00000368440 RRS1Q15050 365 aaKnown RBP20.72■□□□□ 0.91
SMPDL3A-201ENST00000368440 BRWD3Q6RI45 1802 aa20.71■□□□□ 0.91
SMPDL3A-201ENST00000368440 PER1O15534 1290 aaPredicted RBP20.71■□□□□ 0.91
SMPDL3A-201ENST00000368440 KNSTRNQ9Y448 316 aa20.71■□□□□ 0.91
SMPDL3A-201ENST00000368440 MAP2P11137 1827 aaKnown RBP20.7■□□□□ 0.9
SMPDL3A-201ENST00000368440 SPATA31A1Q5TZJ5 1347 aa20.7■□□□□ 0.9
SMPDL3A-201ENST00000368440 THSD7AQ9UPZ6 1657 aa20.69■□□□□ 0.9
SMPDL3A-201ENST00000368440 NSD2O96028 1365 aa20.69■□□□□ 0.9
SMPDL3A-201ENST00000368440 CRB1P82279 1406 aa20.69■□□□□ 0.9
SMPDL3A-201ENST00000368440 AMER1Q5JTC6 1135 aaPredicted RBP20.69■□□□□ 0.9
SMPDL3A-201ENST00000368440 USP35Q9P2H5 1018 aa20.69■□□□□ 0.9
SMPDL3A-201ENST00000368440 WNK3Q9BYP7 1800 aa20.68■□□□□ 0.9
SMPDL3A-201ENST00000368440 FAM98CQ17RN3 349 aaKnown RBP20.68■□□□□ 0.9
SMPDL3A-201ENST00000368440 WDR17Q8IZU2 1322 aa20.68■□□□□ 0.9
SMPDL3A-201ENST00000368440 IP6K1Q92551 441 aa20.67■□□□□ 0.9
SMPDL3A-201ENST00000368440 BLMP54132 1417 aaPredicted RBP20.67■□□□□ 0.9
SMPDL3A-201ENST00000368440 HOXC9P31274 260 aa20.67■□□□□ 0.9
SMPDL3A-201ENST00000368440 RGPD2P0DJD1 1756 aa20.66■□□□□ 0.9
SMPDL3A-201ENST00000368440 TNNT2P45379 298 aaPredicted RBP20.66■□□□□ 0.9
SMPDL3A-201ENST00000368440 EMILIN1Q9Y6C2 1016 aa20.66■□□□□ 0.9
SMPDL3A-201ENST00000368440 ERBB3P21860 1342 aa20.66■□□□□ 0.9
SMPDL3A-201ENST00000368440 AMPHP49418 695 aa20.65■□□□□ 0.9
SMPDL3A-201ENST00000368440 RTL1A6NKG5 1358 aa20.65■□□□□ 0.9
SMPDL3A-201ENST00000368440 FAM208AQ9UK61 1670 aaKnown RBP20.65■□□□□ 0.9
SMPDL3A-201ENST00000368440 ONECUT3O60422 494 aaPredicted RBP20.64■□□□□ 0.9
SMPDL3A-201ENST00000368440 TOM1L2Q6ZVM7 507 aa20.64■□□□□ 0.9
SMPDL3A-201ENST00000368440 CSB-PGBD3P0DP91 1061 aa20.64■□□□□ 0.89
SMPDL3A-201ENST00000368440 SEPT12Q8IYM1 358 aa20.64■□□□□ 0.89
SMPDL3A-201ENST00000368440 ANKRD24Q8TF21 1146 aa20.64■□□□□ 0.89
SMPDL3A-201ENST00000368440 MORC1Q86VD1 984 aa20.62■□□□□ 0.89
SMPDL3A-201ENST00000368440 LTV1Q96GA3 475 aaPredicted RBP20.62■□□□□ 0.89
SMPDL3A-201ENST00000368440 A0A0G2JS52 829 aa20.62■□□□□ 0.89
SMPDL3A-201ENST00000368440 MYT1Q01538 1121 aa20.62■□□□□ 0.89
SMPDL3A-201ENST00000368440 CC2D1BQ5T0F9 858 aaKnown RBP20.62■□□□□ 0.89
SMPDL3A-201ENST00000368440 TCP11L2Q8N4U5 519 aa20.62■□□□□ 0.89
SMPDL3A-201ENST00000368440 FLT4P35916 1363 aa20.61■□□□□ 0.89
SMPDL3A-201ENST00000368440 PARP4Q9UKK3 1724 aaKnown RBP20.61■□□□□ 0.89
SMPDL3A-201ENST00000368440 SOCS7O14512 581 aa20.61■□□□□ 0.89
SMPDL3A-201ENST00000368440 POLKQ9UBT6 870 aa20.61■□□□□ 0.89
SMPDL3A-201ENST00000368440 CNGB1Q14028 1251 aaPredicted RBP20.6■□□□□ 0.89
SMPDL3A-201ENST00000368440 HSP90AB2PQ58FF8 381 aa20.6■□□□□ 0.89
SMPDL3A-201ENST00000368440 BARGINQ6ZT62 677 aa20.6■□□□□ 0.89
SMPDL3A-201ENST00000368440 LRRC37A3O60309 1634 aa20.59■□□□□ 0.89
SMPDL3A-201ENST00000368440 KIF24Q5T7B8 1368 aa20.59■□□□□ 0.89
SMPDL3A-201ENST00000368440 PPM1GO15355 546 aaPredicted RBP20.59■□□□□ 0.89
SMPDL3A-201ENST00000368440 CARD10Q9BWT7 1032 aa20.59■□□□□ 0.89
SMPDL3A-201ENST00000368440 INSRP06213 1382 aa20.59■□□□□ 0.89
SMPDL3A-201ENST00000368440 NLRP2Q9NX02 1062 aa20.58■□□□□ 0.89
SMPDL3A-201ENST00000368440 THRAP3Q9Y2W1 955 aaKnown RBP20.58■□□□□ 0.89
SMPDL3A-201ENST00000368440 SMG6Q86US8 1419 aaKnown RBP20.58■□□□□ 0.89
SMPDL3A-201ENST00000368440 NPC1L1Q9UHC9 1359 aa20.58■□□□□ 0.89
SMPDL3A-201ENST00000368440 DISP2A7MBM2 1401 aa20.56■□□□□ 0.88
SMPDL3A-201ENST00000368440 EP400Q96L91 3159 aa20.56■□□□□ 0.88
SMPDL3A-201ENST00000368440 KRT27Q7Z3Y8 459 aa20.54■□□□□ 0.88
SMPDL3A-201ENST00000368440 DDX10Q13206 875 aaKnown RBP20.54■□□□□ 0.88
SMPDL3A-201ENST00000368440 FAM182BQ5T319 152 aa20.52■□□□□ 0.88
SMPDL3A-201ENST00000368440 NBPF6Q5VWK0 638 aa20.52■□□□□ 0.88
SMPDL3A-201ENST00000368440 NBPF4Q96M43 638 aa20.52■□□□□ 0.88
SMPDL3A-201ENST00000368440 USHBP1Q8N6Y0 703 aa20.52■□□□□ 0.87
SMPDL3A-201ENST00000368440 UPF1Q92900 1129 aaKnown RBP eCLIP20.49■□□□□ 0.87
SMPDL3A-201ENST00000368440 EIF4A2Q14240 407 aaKnown RBP20.48■□□□□ 0.87
SMPDL3A-201ENST00000368440 MEGF6O75095 1541 aa20.48■□□□□ 0.87
SMPDL3A-201ENST00000368440 IL2RBP14784 551 aa20.47■□□□□ 0.87
SMPDL3A-201ENST00000368440 DDB1Q16531 1140 aa20.47■□□□□ 0.87
SMPDL3A-201ENST00000368440 TNS2Q63HR2 1409 aa20.47■□□□□ 0.87
SMPDL3A-201ENST00000368440 SHANK3Q9BYB0 1731 aa20.47■□□□□ 0.87
SMPDL3A-201ENST00000368440 MTHFSP49914 203 aa20.47■□□□□ 0.87
SMPDL3A-201ENST00000368440 CDCA7Q9BWT1 371 aaPredicted RBP20.47■□□□□ 0.87
SMPDL3A-201ENST00000368440 NCAPD2Q15021 1401 aa20.47■□□□□ 0.87
SMPDL3A-201ENST00000368440 PDE3BQ13370 1112 aa20.46■□□□□ 0.87
SMPDL3A-201ENST00000368440 RGPD1P0DJD0 1748 aa20.46■□□□□ 0.87
SMPDL3A-201ENST00000368440 ZNF316A6NFI3 1004 aaPredicted RBP20.45■□□□□ 0.86
SMPDL3A-201ENST00000368440 EYA1Q99502 592 aa20.45■□□□□ 0.86
SMPDL3A-201ENST00000368440 COL3A1P02461 1466 aaPredicted RBP20.43■□□□□ 0.86
SMPDL3A-201ENST00000368440 PARD3Q8TEW0 1356 aa20.42■□□□□ 0.86
SMPDL3A-201ENST00000368440 SBF2Q86WG5 1849 aa20.42■□□□□ 0.86
SMPDL3A-201ENST00000368440 TNS1Q9HBL0 1735 aaKnown RBP20.42■□□□□ 0.86
SMPDL3A-201ENST00000368440 EXOC5O00471 708 aa20.42■□□□□ 0.86
SMPDL3A-201ENST00000368440 MARCH10Q8NA82 808 aaPredicted RBP20.42■□□□□ 0.86
SMPDL3A-201ENST00000368440 OVOS2A0A0G2JMS6 1433 aa20.42■□□□□ 0.86
SMPDL3A-201ENST00000368440 PPP2R1AP30153 589 aa20.41■□□□□ 0.86
SMPDL3A-201ENST00000368440 IGSF1Q8N6C5 1336 aa20.4■□□□□ 0.86
SMPDL3A-201ENST00000368440 PKD1L3Q7Z443 1732 aa20.4■□□□□ 0.86
SMPDL3A-201ENST00000368440 IL13P35225 146 aa20.39■□□□□ 0.86
SMPDL3A-201ENST00000368440 FAM196AQ6ZSG2 479 aa20.38■□□□□ 0.85
SMPDL3A-201ENST00000368440 RAPGEF4Q8WZA2 1011 aa20.38■□□□□ 0.85
SMPDL3A-201ENST00000368440 TATP17735 454 aaPredicted RBP20.37■□□□□ 0.85
SMPDL3A-201ENST00000368440 AEBP1Q8IUX7 1158 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms