RNA–Protein interactions for RNA: ENST00000368298.2

LMNA-204, Transcript of lamin A/C, humanhuman

TSL 1 (best)

Gene LMNA, Length 1,475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-204ENST00000368298 AXIN2Q9Y2T1 843 aa25.58■■□□□ 1.69
LMNA-204ENST00000368298 COL5A2P05997 1499 aaPredicted RBP25.57■■□□□ 1.68
LMNA-204ENST00000368298 RXRBP28702 533 aa25.57■■□□□ 1.68
LMNA-204ENST00000368298 GJD4Q96KN9 370 aaPredicted RBP25.57■■□□□ 1.68
LMNA-204ENST00000368298 MAP3K19Q56UN5 1328 aa25.56■■□□□ 1.68
LMNA-204ENST00000368298 FBLN1P23142 703 aa25.55■■□□□ 1.68
LMNA-204ENST00000368298 CDK12Q9NYV4 1490 aaPredicted RBP25.55■■□□□ 1.68
LMNA-204ENST00000368298 RGPD5Q99666 1765 aa25.54■■□□□ 1.68
LMNA-204ENST00000368298 ZBTB7CA1YPR0 619 aa25.54■■□□□ 1.68
LMNA-204ENST00000368298 KIF24Q5T7B8 1368 aa25.54■■□□□ 1.68
LMNA-204ENST00000368298 IP6K1Q92551 441 aa25.53■■□□□ 1.68
LMNA-204ENST00000368298 SPATA31A5Q5VU36 1347 aa25.53■■□□□ 1.68
LMNA-204ENST00000368298 SPATA31A7Q8IWB4 1347 aa25.53■■□□□ 1.68
LMNA-204ENST00000368298 GLI3P10071 1580 aa25.53■■□□□ 1.68
LMNA-204ENST00000368298 EVA1CP58658 441 aa25.53■■□□□ 1.68
LMNA-204ENST00000368298 BLMP54132 1417 aaPredicted RBP25.52■■□□□ 1.68
LMNA-204ENST00000368298 RTL1A6NKG5 1358 aa25.52■■□□□ 1.68
LMNA-204ENST00000368298 RRS1Q15050 365 aaKnown RBP25.51■■□□□ 1.67
LMNA-204ENST00000368298 STRN4Q9NRL3 753 aa25.51■■□□□ 1.67
LMNA-204ENST00000368298 MAP2P11137 1827 aaKnown RBP25.5■■□□□ 1.67
LMNA-204ENST00000368298 HOXC9P31274 260 aa25.5■■□□□ 1.67
LMNA-204ENST00000368298 MORC1Q86VD1 984 aa25.5■■□□□ 1.67
LMNA-204ENST00000368298 SPATA31A1Q5TZJ5 1347 aa25.49■■□□□ 1.67
LMNA-204ENST00000368298 WDR17Q8IZU2 1322 aa25.49■■□□□ 1.67
LMNA-204ENST00000368298 ONECUT3O60422 494 aaPredicted RBP25.49■■□□□ 1.67
LMNA-204ENST00000368298 LARP1Q6PKG0 1096 aaKnown RBP25.49■■□□□ 1.67
LMNA-204ENST00000368298 ZNF316A6NFI3 1004 aaPredicted RBP25.48■■□□□ 1.67
LMNA-204ENST00000368298 AMPHP49418 695 aa25.48■■□□□ 1.67
LMNA-204ENST00000368298 ERBB3P21860 1342 aa25.48■■□□□ 1.67
LMNA-204ENST00000368298 CRB1P82279 1406 aa25.48■■□□□ 1.67
LMNA-204ENST00000368298 POLKQ9UBT6 870 aa25.47■■□□□ 1.67
LMNA-204ENST00000368298 CCDC9Q9Y3X0 531 aaKnown RBP25.47■■□□□ 1.67
LMNA-204ENST00000368298 PEAK1Q9H792 1746 aa25.47■■□□□ 1.67
LMNA-204ENST00000368298 FLT4P35916 1363 aa25.46■■□□□ 1.67
LMNA-204ENST00000368298 EMILIN1Q9Y6C2 1016 aa25.45■■□□□ 1.66
LMNA-204ENST00000368298 CC2D1BQ5T0F9 858 aaKnown RBP25.44■■□□□ 1.66
LMNA-204ENST00000368298 THRAP3Q9Y2W1 955 aaKnown RBP25.44■■□□□ 1.66
LMNA-204ENST00000368298 SMG6Q86US8 1419 aaKnown RBP25.44■■□□□ 1.66
LMNA-204ENST00000368298 INSRP06213 1382 aa25.43■■□□□ 1.66
LMNA-204ENST00000368298 TNNT2P45379 298 aaPredicted RBP25.43■■□□□ 1.66
LMNA-204ENST00000368298 DDX10Q13206 875 aaKnown RBP25.43■■□□□ 1.66
LMNA-204ENST00000368298 BARGINQ6ZT62 677 aa25.43■■□□□ 1.66
LMNA-204ENST00000368298 ANKRD24Q8TF21 1146 aa25.43■■□□□ 1.66
LMNA-204ENST00000368298 RGS12O14924 1447 aa25.43■■□□□ 1.66
LMNA-204ENST00000368298 FAM208AQ9UK61 1670 aaKnown RBP25.42■■□□□ 1.66
LMNA-204ENST00000368298 TOM1L2Q6ZVM7 507 aa25.41■■□□□ 1.66
LMNA-204ENST00000368298 TCP11L2Q8N4U5 519 aa25.41■■□□□ 1.66
LMNA-204ENST00000368298 CARD10Q9BWT7 1032 aa25.41■■□□□ 1.66
LMNA-204ENST00000368298 CSB-PGBD3P0DP91 1061 aa25.4■■□□□ 1.66
LMNA-204ENST00000368298 HSP90AB2PQ58FF8 381 aa25.4■■□□□ 1.66
LMNA-204ENST00000368298 THSD7AQ9UPZ6 1657 aa25.39■■□□□ 1.66
LMNA-204ENST00000368298 FAM98CQ17RN3 349 aaKnown RBP25.38■■□□□ 1.65
LMNA-204ENST00000368298 USP35Q9P2H5 1018 aa25.37■■□□□ 1.65
LMNA-204ENST00000368298 PPM1GO15355 546 aaPredicted RBP25.36■■□□□ 1.65
LMNA-204ENST00000368298 SEPT12Q8IYM1 358 aa25.36■■□□□ 1.65
LMNA-204ENST00000368298 NLRP2Q9NX02 1062 aa25.34■■□□□ 1.65
LMNA-204ENST00000368298 LTV1Q96GA3 475 aaPredicted RBP25.34■■□□□ 1.65
LMNA-204ENST00000368298 WNK3Q9BYP7 1800 aa25.33■■□□□ 1.65
LMNA-204ENST00000368298 CDCA7Q9BWT1 371 aaPredicted RBP25.33■■□□□ 1.65
LMNA-204ENST00000368298 BRWD3Q6RI45 1802 aa25.32■■□□□ 1.64
LMNA-204ENST00000368298 RGPD2P0DJD1 1756 aa25.31■■□□□ 1.64
LMNA-204ENST00000368298 DISP2A7MBM2 1401 aa25.31■■□□□ 1.64
LMNA-204ENST00000368298 MTHFSP49914 203 aa25.31■■□□□ 1.64
LMNA-204ENST00000368298 PARP4Q9UKK3 1724 aaKnown RBP25.31■■□□□ 1.64
LMNA-204ENST00000368298 PARD3Q8TEW0 1356 aa25.3■■□□□ 1.64
LMNA-204ENST00000368298 NBPF6Q5VWK0 638 aa25.3■■□□□ 1.64
LMNA-204ENST00000368298 NBPF4Q96M43 638 aa25.3■■□□□ 1.64
LMNA-204ENST00000368298 CNGB1Q14028 1251 aaPredicted RBP25.28■■□□□ 1.64
LMNA-204ENST00000368298 DIEXFQ68CQ4 756 aaKnown RBP25.28■■□□□ 1.64
LMNA-204ENST00000368298 NCAPD2Q15021 1401 aa25.28■■□□□ 1.64
LMNA-204ENST00000368298 EIF4A2Q14240 407 aaKnown RBP25.28■■□□□ 1.64
LMNA-204ENST00000368298 UPF1Q92900 1129 aaKnown RBP eCLIP25.27■■□□□ 1.64
LMNA-204ENST00000368298 A0A0G2JS52 829 aa25.26■■□□□ 1.63
LMNA-204ENST00000368298 PPP2R1AP30153 589 aa25.26■■□□□ 1.63
LMNA-204ENST00000368298 MYT1Q01538 1121 aa25.26■■□□□ 1.63
LMNA-204ENST00000368298 IL2RBP14784 551 aa25.25■■□□□ 1.63
LMNA-204ENST00000368298 KRT27Q7Z3Y8 459 aa25.25■■□□□ 1.63
LMNA-204ENST00000368298 RALBP1Q15311 655 aa25.24■■□□□ 1.63
LMNA-204ENST00000368298 EYA1Q99502 592 aa25.24■■□□□ 1.63
LMNA-204ENST00000368298 LRRC37A3O60309 1634 aa25.24■■□□□ 1.63
LMNA-204ENST00000368298 IL13P35225 146 aa25.21■■□□□ 1.63
LMNA-204ENST00000368298 IGSF1Q8N6C5 1336 aa25.21■■□□□ 1.63
LMNA-204ENST00000368298 COL3A1P02461 1466 aaPredicted RBP25.21■■□□□ 1.63
LMNA-204ENST00000368298 DDB1Q16531 1140 aa25.21■■□□□ 1.63
LMNA-204ENST00000368298 RGPD1P0DJD0 1748 aa25.2■■□□□ 1.62
LMNA-204ENST00000368298 EXOC5O00471 708 aa25.19■■□□□ 1.62
LMNA-204ENST00000368298 USHBP1Q8N6Y0 703 aa25.19■■□□□ 1.62
LMNA-204ENST00000368298 PDE3BQ13370 1112 aa25.18■■□□□ 1.62
LMNA-204ENST00000368298 TNS2Q63HR2 1409 aa25.17■■□□□ 1.62
LMNA-204ENST00000368298 MEGF6O75095 1541 aa25.17■■□□□ 1.62
LMNA-204ENST00000368298 DIAPH1O60610 1272 aaKnown RBP25.17■■□□□ 1.62
LMNA-204ENST00000368298 PLEKHG2Q9H7P9 1386 aa25.17■■□□□ 1.62
LMNA-204ENST00000368298 OVOS2A0A0G2JMS6 1433 aa25.17■■□□□ 1.62
LMNA-204ENST00000368298 RAPGEF4Q8WZA2 1011 aa25.15■■□□□ 1.62
LMNA-204ENST00000368298 CFAP53Q96M91 514 aa25.15■■□□□ 1.62
LMNA-204ENST00000368298 PRKRIP1Q9H875 184 aaPredicted RBP25.15■■□□□ 1.62
LMNA-204ENST00000368298 KDRP35968 1356 aa25.14■■□□□ 1.61
LMNA-204ENST00000368298 BCL9O00512 1426 aa25.13■■□□□ 1.61
LMNA-204ENST00000368298 TATP17735 454 aaPredicted RBP25.13■■□□□ 1.61
LMNA-204ENST00000368298 MYBBP1AQ9BQG0 1328 aaKnown RBP25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms