RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 CCP110O43303 1012 aa10.32□□□□□ -0.76
SYNE1-206ENST00000367253 BMS1Q14692 1282 aaKnown RBP10.32□□□□□ -0.76
SYNE1-206ENST00000367253 RWDD1Q9H446 243 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-206ENST00000367253 PARP3Q9Y6F1 533 aa10.32□□□□□ -0.76
SYNE1-206ENST00000367253 SIN3AQ96ST3 1273 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 TCIRG1Q13488 830 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 SCLT1Q96NL6 688 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 ZNF287Q9HBT7 754 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 PRKAG2Q9UGJ0 569 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 DDX49Q9Y6V7 483 aaKnown RBP10.31□□□□□ -0.76
SYNE1-206ENST00000367253 GOLGA6L19H0YKK7 550 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 RFC4P35249 363 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 PPP4R3AQ6IN85 833 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 PDCL3Q9H2J4 239 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 TSR1Q2NL82 804 aaKnown RBP10.31□□□□□ -0.76
SYNE1-206ENST00000367253 OTUD7BQ6GQQ9 843 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 GAS2L2Q8NHY3 880 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 TEX14Q8IWB6 1497 aa10.31□□□□□ -0.76
SYNE1-206ENST00000367253 APBB1O00213 710 aa10.3□□□□□ -0.76
SYNE1-206ENST00000367253 OGFOD1Q8N543 542 aa10.3□□□□□ -0.76
SYNE1-206ENST00000367253 CDK13Q14004 1512 aaKnown RBP10.3□□□□□ -0.76
SYNE1-206ENST00000367253 USP8P40818 1118 aa10.3□□□□□ -0.76
SYNE1-206ENST00000367253 BRMS1Q9HCU9 246 aa10.3□□□□□ -0.76
SYNE1-206ENST00000367253 XBP1P17861 261 aa10.3□□□□□ -0.76
SYNE1-206ENST00000367253 HSP90B2PQ58FF3 399 aa10.3□□□□□ -0.76
SYNE1-206ENST00000367253 MFAP1P55081 439 aaKnown RBP10.3□□□□□ -0.76
SYNE1-206ENST00000367253 ARMCX6Q7L4S7 300 aa10.3□□□□□ -0.76
SYNE1-206ENST00000367253 TNIP1Q15025 636 aa10.29□□□□□ -0.76
SYNE1-206ENST00000367253 HOOK2Q96ED9 719 aa10.29□□□□□ -0.76
SYNE1-206ENST00000367253 TMOD3Q9NYL9 352 aa10.29□□□□□ -0.76
SYNE1-206ENST00000367253 KIAA0556O60303 1618 aa10.29□□□□□ -0.76
SYNE1-206ENST00000367253 TPM1P09493 284 aa10.29□□□□□ -0.76
SYNE1-206ENST00000367253 CA8P35219 290 aa10.29□□□□□ -0.76
SYNE1-206ENST00000367253 IGHMBP2P38935 993 aaKnown RBP10.29□□□□□ -0.76
SYNE1-206ENST00000367253 TFCP2L1Q9NZI6 479 aa10.29□□□□□ -0.76
SYNE1-206ENST00000367253 BECN2A8MW95 431 aa10.28□□□□□ -0.76
SYNE1-206ENST00000367253 HMGB1P1B2RPK0 211 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-206ENST00000367253 RUFY2Q8WXA3 655 aa10.28□□□□□ -0.76
SYNE1-206ENST00000367253 CPSF2Q9P2I0 782 aaKnown RBP10.28□□□□□ -0.76
SYNE1-206ENST00000367253 KTN1Q86UP2 1357 aaKnown RBP10.28□□□□□ -0.76
SYNE1-206ENST00000367253 ZNF644Q9H582 1327 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-206ENST00000367253 CCDC144AA2RUR9 1427 aa10.28□□□□□ -0.76
SYNE1-206ENST00000367253 SH3BGRP55822 239 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-206ENST00000367253 ATP2B2Q01814 1243 aa10.28□□□□□ -0.76
SYNE1-206ENST00000367253 CT47A1Q5JQC4 288 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-206ENST00000367253 DCTN1Q14203 1278 aa10.28□□□□□ -0.76
SYNE1-206ENST00000367253 CNNM1Q9NRU3 951 aa10.28□□□□□ -0.76
SYNE1-206ENST00000367253 BRDTQ58F21 947 aaPredicted RBP10.27□□□□□ -0.76
SYNE1-206ENST00000367253 KIF16BQ96L93 1317 aa10.27□□□□□ -0.76
SYNE1-206ENST00000367253 PDE6BP35913 854 aa10.27□□□□□ -0.77
SYNE1-206ENST00000367253 SF3A1Q15459 793 aaKnown RBP10.27□□□□□ -0.77
SYNE1-206ENST00000367253 RUFY1Q96T51 708 aa10.27□□□□□ -0.77
SYNE1-206ENST00000367253 DIAPH3Q9NSV4 1193 aa10.27□□□□□ -0.77
SYNE1-206ENST00000367253 TRIM6-TRIM34B2RNG4 842 aa10.27□□□□□ -0.77
SYNE1-206ENST00000367253 RXRBP28702 533 aa10.27□□□□□ -0.77
SYNE1-206ENST00000367253 CREBRFQ8IUR6 639 aa10.27□□□□□ -0.77
SYNE1-206ENST00000367253 CRACR2BQ8N4Y2 399 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-206ENST00000367253 KCTD17Q8N5Z5 321 aa10.27□□□□□ -0.77
SYNE1-206ENST00000367253 MNS1Q8NEH6 495 aa10.27□□□□□ -0.77
SYNE1-206ENST00000367253 TPD52L1Q16890 204 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-206ENST00000367253 TEX13AQ9BXU3 409 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-206ENST00000367253 ST18O60284 1047 aa10.26□□□□□ -0.77
SYNE1-206ENST00000367253 EIF6P56537 245 aaKnown RBP10.26□□□□□ -0.77
SYNE1-206ENST00000367253 RAPGEF6Q8TEU7 1601 aa10.26□□□□□ -0.77
SYNE1-206ENST00000367253 SAMD9Q5K651 1589 aa10.26□□□□□ -0.77
SYNE1-206ENST00000367253 HFM1A2PYH4 1435 aa10.26□□□□□ -0.77
SYNE1-206ENST00000367253 IPO7O95373 1038 aaKnown RBP10.26□□□□□ -0.77
SYNE1-206ENST00000367253 SAFBQ15424 915 aaKnown RBP eCLIP10.26□□□□□ -0.77
SYNE1-206ENST00000367253 BICDL1Q6ZP65 573 aa10.26□□□□□ -0.77
SYNE1-206ENST00000367253 SECISBP2LQ93073 1101 aaKnown RBP10.26□□□□□ -0.77
SYNE1-206ENST00000367253 CDCA7Q9BWT1 371 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-206ENST00000367253 RCAN3Q9UKA8 241 aa10.26□□□□□ -0.77
SYNE1-206ENST00000367253 KIF15Q9NS87 1388 aa10.26□□□□□ -0.77
SYNE1-206ENST00000367253 FLAD1Q8NFF5 587 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 DISP1Q96F81 1524 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 LRSAM1Q6UWE0 723 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 HOMER1Q86YM7 354 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 RRP7AQ9Y3A4 280 aaKnown RBP10.25□□□□□ -0.77
SYNE1-206ENST00000367253 NPHP3Q7Z494 1330 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 ARHGAP5Q13017 1502 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 IFIT2P09913 472 aaKnown RBP10.25□□□□□ -0.77
SYNE1-206ENST00000367253 SLC26A8Q96RN1 970 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 ATP6V1DQ9Y5K8 247 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 NUP153P49790 1475 aaKnown RBP10.25□□□□□ -0.77
SYNE1-206ENST00000367253 CPLX1O14810 134 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 FYB1O15117 783 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 NEBLO76041 1014 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 NUTM2GQ5VZR2 741 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 NFXL1Q6ZNB6 911 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 ANKRD20A12PQ8NF67 263 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 ANKRD50Q9ULJ7 1429 aa10.25□□□□□ -0.77
SYNE1-206ENST00000367253 IBSPP21815 317 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-206ENST00000367253 FANCIQ9NVI1 1328 aa10.24□□□□□ -0.77
SYNE1-206ENST00000367253 PLIN1O60240 522 aa10.24□□□□□ -0.77
SYNE1-206ENST00000367253 EHMT1Q9H9B1 1298 aa10.24□□□□□ -0.77
SYNE1-206ENST00000367253 FOXD4L1Q9NU39 408 aa10.24□□□□□ -0.77
SYNE1-206ENST00000367253 WASHC4Q2M389 1173 aa10.23□□□□□ -0.77
SYNE1-206ENST00000367253 NACAP1Q9BZK3 213 aa10.23□□□□□ -0.77
SYNE1-206ENST00000367253 DIAPH1O60610 1272 aaKnown RBP10.23□□□□□ -0.77
SYNE1-206ENST00000367253 RALYLQ86SE5 291 aaKnown RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms