RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 TCP11L2Q8N4U5 519 aa12.77□□□□□ -0.37
HMGB1P39-201ENST00000366304 SPDYE4A6NLX3 237 aa12.76□□□□□ -0.37
HMGB1P39-201ENST00000366304 SYT17Q9BSW7 474 aa12.76□□□□□ -0.37
HMGB1P39-201ENST00000366304 FHDC1Q9C0D6 1143 aaPredicted RBP12.76□□□□□ -0.37
HMGB1P39-201ENST00000366304 TRAK1Q9UPV9 953 aa12.76□□□□□ -0.37
HMGB1P39-201ENST00000366304 EVA1CP58658 441 aa12.75□□□□□ -0.37
HMGB1P39-201ENST00000366304 MPHOSPH9Q99550 1183 aa12.75□□□□□ -0.37
HMGB1P39-201ENST00000366304 SGIP1Q9BQI5 828 aa12.75□□□□□ -0.37
HMGB1P39-201ENST00000366304 ATP7BP35670 1465 aa12.74□□□□□ -0.37
HMGB1P39-201ENST00000366304 PLSCR1O15162 318 aa12.74□□□□□ -0.37
HMGB1P39-201ENST00000366304 PARP4Q9UKK3 1724 aaKnown RBP12.74□□□□□ -0.37
HMGB1P39-201ENST00000366304 POTEHQ6S545 545 aa12.73□□□□□ -0.37
HMGB1P39-201ENST00000366304 RGPD3A6NKT7 1758 aaPredicted RBP12.73□□□□□ -0.37
HMGB1P39-201ENST00000366304 RGPD4Q7Z3J3 1758 aa12.73□□□□□ -0.37
HMGB1P39-201ENST00000366304 CPDO75976 1380 aa12.72□□□□□ -0.37
HMGB1P39-201ENST00000366304 NUDT16Q96DE0 195 aaKnown RBP12.72□□□□□ -0.37
HMGB1P39-201ENST00000366304 COL5A2P05997 1499 aaPredicted RBP12.72□□□□□ -0.37
HMGB1P39-201ENST00000366304 OVOS2A0A0G2JMS6 1433 aa12.71□□□□□ -0.37
HMGB1P39-201ENST00000366304 OVOS2A0A0J9YW53 1432 aa12.71□□□□□ -0.37
HMGB1P39-201ENST00000366304 OVOS2Q6IE36 1432 aa12.71□□□□□ -0.37
HMGB1P39-201ENST00000366304 USP19O94966 1318 aa12.71□□□□□ -0.37
HMGB1P39-201ENST00000366304 LRRC37A3O60309 1634 aa12.71□□□□□ -0.37
HMGB1P39-201ENST00000366304 BCL11BQ9C0K0 894 aaPredicted RBP12.71□□□□□ -0.37
HMGB1P39-201ENST00000366304 EIF3AQ14152 1382 aaKnown RBP12.7□□□□□ -0.38
HMGB1P39-201ENST00000366304 SBF2Q86WG5 1849 aa12.7□□□□□ -0.38
HMGB1P39-201ENST00000366304 MARCH10Q8NA82 808 aaPredicted RBP12.7□□□□□ -0.38
HMGB1P39-201ENST00000366304 CLEC11AQ9Y240 323 aa12.7□□□□□ -0.38
HMGB1P39-201ENST00000366304 THRAP3Q9Y2W1 955 aaKnown RBP12.7□□□□□ -0.38
HMGB1P39-201ENST00000366304 POLR3AO14802 1390 aaPredicted RBP12.69□□□□□ -0.38
HMGB1P39-201ENST00000366304 ACEP12821 1306 aa12.69□□□□□ -0.38
HMGB1P39-201ENST00000366304 SPDYE1Q8NFV5 336 aaPredicted RBP12.69□□□□□ -0.38
HMGB1P39-201ENST00000366304 CRB1P82279 1406 aa12.68□□□□□ -0.38
HMGB1P39-201ENST00000366304 GCP02774 474 aa12.67□□□□□ -0.38
HMGB1P39-201ENST00000366304 SLC15A2Q16348 729 aa12.67□□□□□ -0.38
HMGB1P39-201ENST00000366304 TXNRD1Q16881 649 aa12.67□□□□□ -0.38
HMGB1P39-201ENST00000366304 ABTB2Q8N961 1025 aa12.66□□□□□ -0.38
HMGB1P39-201ENST00000366304 CDK19Q9BWU1 502 aa12.66□□□□□ -0.38
HMGB1P39-201ENST00000366304 MTFR1LQ9H019 292 aa12.66□□□□□ -0.38
HMGB1P39-201ENST00000366304 TOPAZ1Q8N9V7 1692 aa12.66□□□□□ -0.38
HMGB1P39-201ENST00000366304 DDB1Q16531 1140 aa12.65□□□□□ -0.38
HMGB1P39-201ENST00000366304 GOLGB1Q14789 3259 aaKnown RBP12.65□□□□□ -0.38
HMGB1P39-201ENST00000366304 SHANK3Q9BYB0 1731 aa12.65□□□□□ -0.38
HMGB1P39-201ENST00000366304 CHD4Q14839 1912 aa12.64□□□□□ -0.39
HMGB1P39-201ENST00000366304 BCL9O00512 1426 aa12.64□□□□□ -0.39
HMGB1P39-201ENST00000366304 PLEKHG3A1L390 1219 aa12.64□□□□□ -0.39
HMGB1P39-201ENST00000366304 GIGYF1O75420 1035 aaPredicted RBP12.64□□□□□ -0.39
HMGB1P39-201ENST00000366304 ARXQ96QS3 562 aa12.64□□□□□ -0.39
HMGB1P39-201ENST00000366304 STK32BQ9NY57 414 aa12.64□□□□□ -0.39
HMGB1P39-201ENST00000366304 AXIN2Q9Y2T1 843 aa12.64□□□□□ -0.39
HMGB1P39-201ENST00000366304 MAP3K5Q99683 1374 aa12.64□□□□□ -0.39
HMGB1P39-201ENST00000366304 ITSN1Q15811 1721 aa12.63□□□□□ -0.39
HMGB1P39-201ENST00000366304 C11orf95C9JLR9 678 aaPredicted RBP12.63□□□□□ -0.39
HMGB1P39-201ENST00000366304 PAPPAQ13219 1627 aa12.62□□□□□ -0.39
HMGB1P39-201ENST00000366304 ARHGEF28Q8N1W1 1705 aaKnown RBP12.62□□□□□ -0.39
HMGB1P39-201ENST00000366304 ZBTB7CA1YPR0 619 aa12.62□□□□□ -0.39
HMGB1P39-201ENST00000366304 ZNF827Q17R98 1081 aa12.62□□□□□ -0.39
HMGB1P39-201ENST00000366304 KDM2AQ9Y2K7 1162 aa12.62□□□□□ -0.39
HMGB1P39-201ENST00000366304 AATKQ6ZMQ8 1374 aa12.61□□□□□ -0.39
HMGB1P39-201ENST00000366304 CCDC61Q9Y6R9 512 aa12.61□□□□□ -0.39
HMGB1P39-201ENST00000366304 COL18A1P39060 1754 aa12.61□□□□□ -0.39
HMGB1P39-201ENST00000366304 GPR162Q16538 588 aa12.6□□□□□ -0.39
HMGB1P39-201ENST00000366304 TOM1L2Q6ZVM7 507 aa12.6□□□□□ -0.39
HMGB1P39-201ENST00000366304 PIP4P2Q8N4L2 257 aa12.6□□□□□ -0.39
HMGB1P39-201ENST00000366304 WNK3Q9BYP7 1800 aa12.6□□□□□ -0.39
HMGB1P39-201ENST00000366304 SLIT3O75094 1523 aa12.59□□□□□ -0.39
HMGB1P39-201ENST00000366304 NLRP13Q86W25 1043 aa12.59□□□□□ -0.39
HMGB1P39-201ENST00000366304 NLGN2Q8NFZ4 835 aa12.59□□□□□ -0.39
HMGB1P39-201ENST00000366304 WDR17Q8IZU2 1322 aa12.59□□□□□ -0.39
HMGB1P39-201ENST00000366304 DCAF11Q8TEB1 546 aa12.58□□□□□ -0.4
HMGB1P39-201ENST00000366304 LRRC4BQ9NT99 713 aa12.58□□□□□ -0.4
HMGB1P39-201ENST00000366304 YBX3P16989 372 aaKnown RBP eCLIP12.57□□□□□ -0.4
HMGB1P39-201ENST00000366304 FXR2P51116 673 aaKnown RBP eCLIP12.56□□□□□ -0.4
HMGB1P39-201ENST00000366304 ACSBG1Q96GR2 724 aa12.56□□□□□ -0.4
HMGB1P39-201ENST00000366304 PPIP5K1Q6PFW1 1433 aa12.55□□□□□ -0.4
HMGB1P39-201ENST00000366304 PELP1Q8IZL8 1130 aaKnown RBP12.55□□□□□ -0.4
HMGB1P39-201ENST00000366304 AKAP12Q02952 1782 aa12.55□□□□□ -0.4
HMGB1P39-201ENST00000366304 NHSQ6T4R5 1651 aa12.54□□□□□ -0.4
HMGB1P39-201ENST00000366304 NLRP6P59044 892 aa12.54□□□□□ -0.4
HMGB1P39-201ENST00000366304 KLHL34Q8N239 644 aa12.54□□□□□ -0.4
HMGB1P39-201ENST00000366304 CARD10Q9BWT7 1032 aa12.54□□□□□ -0.4
HMGB1P39-201ENST00000366304 CABP2Q9NPB3 220 aa12.54□□□□□ -0.4
HMGB1P39-201ENST00000366304 PIK3C2AO00443 1686 aa12.54□□□□□ -0.4
HMGB1P39-201ENST00000366304 USP6P35125 1406 aa12.54□□□□□ -0.4
HMGB1P39-201ENST00000366304 CPSF1Q10570 1443 aaKnown RBP12.54□□□□□ -0.4
HMGB1P39-201ENST00000366304 FKBP8Q14318 412 aa12.53□□□□□ -0.4
HMGB1P39-201ENST00000366304 ARHGEF25Q86VW2 580 aa12.53□□□□□ -0.4
HMGB1P39-201ENST00000366304 TNS2Q63HR2 1409 aa12.53□□□□□ -0.4
HMGB1P39-201ENST00000366304 ATP10DQ9P241 1426 aa12.53□□□□□ -0.4
HMGB1P39-201ENST00000366304 COL24A1Q17RW2 1714 aa12.52□□□□□ -0.41
HMGB1P39-201ENST00000366304 EXOC5O00471 708 aa12.52□□□□□ -0.41
HMGB1P39-201ENST00000366304 KCNQ4P56696 695 aa12.52□□□□□ -0.41
HMGB1P39-201ENST00000366304 CDCA7Q9BWT1 371 aaPredicted RBP12.52□□□□□ -0.41
HMGB1P39-201ENST00000366304 PNPLA7Q6ZV29 1317 aa12.52□□□□□ -0.41
HMGB1P39-201ENST00000366304 PRR29P0C7W0 189 aa12.51□□□□□ -0.41
HMGB1P39-201ENST00000366304 NBPF1Q3BBV0 1214 aa12.51□□□□□ -0.41
HMGB1P39-201ENST00000366304 CABP1Q9NZU7 370 aa12.51□□□□□ -0.41
HMGB1P39-201ENST00000366304 TRPM1Q7Z4N2 1603 aa12.51□□□□□ -0.41
HMGB1P39-201ENST00000366304 RGPD5Q99666 1765 aa12.51□□□□□ -0.41
HMGB1P39-201ENST00000366304 BTAF1O14981 1849 aa12.49□□□□□ -0.41
HMGB1P39-201ENST00000366304 SOX12O15370 315 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms