RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.93□□□□□ -0.662e-6■■■□□ 18.5
VPS13A-203ENST00000360280 BRPF3Q9ULD4 1205 aa10.92□□□□□ -0.66
VPS13A-203ENST00000360280 SMG6Q86US8 1419 aaKnown RBP10.92□□□□□ -0.66
VPS13A-203ENST00000360280 SPECC1LQ69YQ0 1117 aa10.92□□□□□ -0.66
VPS13A-203ENST00000360280 CCDC175P0C221 793 aa10.92□□□□□ -0.66
VPS13A-203ENST00000360280 FILIP1Q7Z7B0 1213 aa10.92□□□□□ -0.66
VPS13A-203ENST00000360280 KIF5CO60282 957 aa10.92□□□□□ -0.66
VPS13A-203ENST00000360280 VPS36Q86VN1 386 aa10.92□□□□□ -0.66
VPS13A-203ENST00000360280 MAPK8IP2Q13387 824 aaPredicted RBP10.91□□□□□ -0.66
VPS13A-203ENST00000360280 ZSCAN30Q86W11 494 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 TAOK3Q9H2K8 898 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 ESPNB1AK53 854 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 CCDC113Q9H0I3 377 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 IFFO1Q0D2I5 559 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 UPF3BQ9BZI7 483 aaKnown RBP10.91□□□□□ -0.66
VPS13A-203ENST00000360280 GNAI3P08754 354 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 KIF18AQ8NI77 898 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 GPATCH11Q8N954 259 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 POTEB2H3BUK9 544 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 CASQ1P31415 396 aa10.91□□□□□ -0.66
VPS13A-203ENST00000360280 NOL7Q9UMY1 257 aaKnown RBP10.91□□□□□ -0.66
VPS13A-203ENST00000360280 CEBPZQ03701 1054 aaKnown RBP10.9□□□□□ -0.66
VPS13A-203ENST00000360280 GRIPAP1Q4V328 841 aa10.9□□□□□ -0.66
VPS13A-203ENST00000360280 CCDC57Q2TAC2 916 aa10.9□□□□□ -0.66
VPS13A-203ENST00000360280 BMP2KQ9NSY1 1161 aaPredicted RBP10.9□□□□□ -0.66
VPS13A-203ENST00000360280 SPA17Q15506 151 aa10.9□□□□□ -0.67
VPS13A-203ENST00000360280 NUP62CLQ9H1M0 184 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 CNTLNQ9NXG0 1405 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 NECTIN2Q92692 538 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 TRHP20396 242 aaPredicted RBP10.89□□□□□ -0.67
VPS13A-203ENST00000360280 ST20-MTHFSA0A0A6YYL1 179 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 EIF5P55010 431 aaKnown RBP10.89□□□□□ -0.67
VPS13A-203ENST00000360280 APAF1O14727 1248 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 SFPQP23246 707 aaKnown RBP eCLIP10.89□□□□□ -0.67
VPS13A-203ENST00000360280 PTPN14Q15678 1187 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 SCAPERQ9BY12 1400 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 K7ELQ4 463 aaPredicted RBP10.89□□□□□ -0.67
VPS13A-203ENST00000360280 RIC3Q7Z5B4 369 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 SPATA32Q96LK8 384 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 TSPYL4Q9UJ04 414 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 SEPT6Q14141 434 aa10.89□□□□□ -0.67
VPS13A-203ENST00000360280 CCDC69A6NI79 296 aa10.88□□□□□ -0.67
VPS13A-203ENST00000360280 NACAP1Q9BZK3 213 aa10.88□□□□□ -0.67
VPS13A-203ENST00000360280 CCDC83Q8IWF9 413 aa10.88□□□□□ -0.67
VPS13A-203ENST00000360280 GCC1Q96CN9 775 aa10.88□□□□□ -0.67
VPS13A-203ENST00000360280 BMS1Q14692 1282 aaKnown RBP10.88□□□□□ -0.67
VPS13A-203ENST00000360280 SYTL4Q96C24 671 aaPredicted RBP10.88□□□□□ -0.67
VPS13A-203ENST00000360280 ATP2B1P20020 1258 aa10.88□□□□□ -0.67
VPS13A-203ENST00000360280 GSTTP1A0A1W2PQM5 241 aa10.88□□□□□ -0.67
VPS13A-203ENST00000360280 MAP3K11Q16584 847 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 GOPCQ9HD26 462 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 TRAK1Q9UPV9 953 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 VGFO15240 615 aaPredicted RBP10.87□□□□□ -0.67
VPS13A-203ENST00000360280 CEP131Q9UPN4 1083 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 SOGA1O94964 1423 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 CFAP100Q494V2 611 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 HOOK3Q86VS8 718 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 DDX12PQ92771 950 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 NAA15Q9BXJ9 866 aaKnown RBP10.87□□□□□ -0.67
VPS13A-203ENST00000360280 GNL3LQ9NVN8 582 aaKnown RBP10.87□□□□□ -0.67
VPS13A-203ENST00000360280 WASF1Q92558 559 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS13A-203ENST00000360280 V9GYY5 206 aaPredicted RBP10.87□□□□□ -0.67
VPS13A-203ENST00000360280 DAAM2Q86T65 1068 aa10.87□□□□□ -0.67
VPS13A-203ENST00000360280 DNAJC2Q99543 621 aaKnown RBP10.87□□□□□ -0.67
VPS13A-203ENST00000360280 RNF187Q5TA31 235 aaPredicted RBP10.87□□□□□ -0.67
VPS13A-203ENST00000360280 CIZ1Q9ULV3 898 aaPredicted RBP10.86□□□□□ -0.67
VPS13A-203ENST00000360280 BRD4O60885 1362 aaPredicted RBP10.86□□□□□ -0.67
VPS13A-203ENST00000360280 KIF6Q6ZMV9 814 aa10.86□□□□□ -0.67
VPS13A-203ENST00000360280 SREK1Q8WXA9 508 aaKnown RBP10.86□□□□□ -0.67
VPS13A-203ENST00000360280 MTMR7Q9Y216 660 aa10.86□□□□□ -0.67
VPS13A-203ENST00000360280 CCDC178Q5BJE1 867 aa10.86□□□□□ -0.67
VPS13A-203ENST00000360280 ZHX3Q9H4I2 956 aa10.86□□□□□ -0.67
VPS13A-203ENST00000360280 PLEKHH1Q9ULM0 1364 aa10.86□□□□□ -0.67
VPS13A-203ENST00000360280 CCDC30Q5VVM6 783 aa10.86□□□□□ -0.67
VPS13A-203ENST00000360280 LARP1BQ659C4 914 aaKnown RBP10.86□□□□□ -0.67
VPS13A-203ENST00000360280 IPO4Q8TEX9 1081 aaKnown RBP10.86□□□□□ -0.67
VPS13A-203ENST00000360280 UBE4AQ14139 1066 aa10.86□□□□□ -0.67
VPS13A-203ENST00000360280 MATR3P43243 847 aaKnown RBP eCLIP10.85□□□□□ -0.673e-6■■■■□ 20.9
VPS13A-203ENST00000360280 SMARCC1Q92922 1105 aaPredicted RBP10.85□□□□□ -0.67
VPS13A-203ENST00000360280 FKBP15Q5T1M5 1219 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 CTR9Q6PD62 1173 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 ZWINTO95229 277 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 DNAAF4Q8WXU2 420 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 BBXQ8WY36 941 aaPredicted RBP10.85□□□□□ -0.67
VPS13A-203ENST00000360280 CCDC7Q96M83 1385 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 FERP16591 822 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 ZSCAN25Q6NSZ9 544 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 PANK1Q8TE04 598 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 SSR1P43307 286 aaKnown RBP10.85□□□□□ -0.67
VPS13A-203ENST00000360280 SOGA3Q5TF21 947 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 FAM114A1Q8IWE2 563 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 IL27Q8NEV9 243 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 MNAT1P51948 309 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 CBX1P83916 185 aa10.85□□□□□ -0.67
VPS13A-203ENST00000360280 GOLGA6L9A6NEM1 432 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 TTC39AQ5SRH9 613 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 TIGD1Q96MW7 591 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 SRCIN1Q9C0H9 1055 aa10.84□□□□□ -0.67
VPS13A-203ENST00000360280 PPP6R1Q9UPN7 881 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms