RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 FANCIQ9NVI1 1328 aa12.1□□□□□ -0.47
CLIP1-202ENST00000358808 SSR1P43307 286 aaKnown RBP12.1□□□□□ -0.47
CLIP1-202ENST00000358808 SCLT1Q96NL6 688 aa12.1□□□□□ -0.47
CLIP1-202ENST00000358808 LUC7LQ9NQ29 371 aaKnown RBP12.1□□□□□ -0.47
CLIP1-202ENST00000358808 USP47Q96K76 1375 aa12.1□□□□□ -0.47
CLIP1-202ENST00000358808 GOLGA6L7A0A1B0GV03 622 aa12.1□□□□□ -0.47
CLIP1-202ENST00000358808 NLRP6P59044 892 aa12.1□□□□□ -0.47
CLIP1-202ENST00000358808 KINO60870 393 aaKnown RBP12.09□□□□□ -0.47
CLIP1-202ENST00000358808 EPRSP07814 1512 aaKnown RBP12.09□□□□□ -0.47
CLIP1-202ENST00000358808 MYCNP04198 464 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-202ENST00000358808 ERC1Q8IUD2 1116 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 ZNF76P36508 570 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 TRIM5Q9C035 493 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 CCP110O43303 1012 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 HMOX1P09601 288 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 STIM1Q13586 685 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 CENPHQ9H3R5 247 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 WDR97A6NE52 1622 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 LEKR1Q6ZMV7 388 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 ABTB2Q8N961 1025 aa12.09□□□□□ -0.47
CLIP1-202ENST00000358808 RRP1P56182 461 aaKnown RBP12.08□□□□□ -0.48
CLIP1-202ENST00000358808 TEX14Q8IWB6 1497 aa12.08□□□□□ -0.48
CLIP1-202ENST00000358808 PIP4K2BP78356 416 aa12.08□□□□□ -0.48
CLIP1-202ENST00000358808 CCDC158Q5M9N0 1113 aa12.08□□□□□ -0.48
CLIP1-202ENST00000358808 CDK13Q14004 1512 aaKnown RBP12.08□□□□□ -0.48
CLIP1-202ENST00000358808 SSBP05455 408 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLIP1-202ENST00000358808 WDHD1O75717 1129 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-202ENST00000358808 DNAI2Q9GZS0 605 aa12.08□□□□□ -0.48
CLIP1-202ENST00000358808 CABP2Q9NPB3 220 aa12.08□□□□□ -0.48
CLIP1-202ENST00000358808 CEBPZQ03701 1054 aaKnown RBP12.07□□□□□ -0.48
CLIP1-202ENST00000358808 STK38Q15208 465 aa12.07□□□□□ -0.48
CLIP1-202ENST00000358808 ZNF396Q96N95 335 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-202ENST00000358808 PRKRIP1Q9H875 184 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-202ENST00000358808 PBRM1Q86U86 1689 aa12.07□□□□□ -0.48
CLIP1-202ENST00000358808 GNAI1P63096 354 aa12.07□□□□□ -0.48
CLIP1-202ENST00000358808 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.07□□□□□ -0.484e-6■■□□□ 12.7
CLIP1-202ENST00000358808 CCDC39Q9UFE4 941 aa12.07□□□□□ -0.48
CLIP1-202ENST00000358808 RABEP1Q15276 862 aa12.07□□□□□ -0.48
CLIP1-202ENST00000358808 TXLNBQ8N3L3 684 aa12.07□□□□□ -0.48
CLIP1-202ENST00000358808 APAF1O14727 1248 aa12.07□□□□□ -0.48
CLIP1-202ENST00000358808 CCDC69A6NI79 296 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 KIAA0754O94854 1291 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 RAPGEF3O95398 923 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 ANKRD50Q9ULJ7 1429 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 PPFIBP1Q86W92 1011 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 NUP133Q8WUM0 1156 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 LNPKQ9C0E8 428 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 SERPINC1P01008 464 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 ANAPC15P60006 121 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 C9orf84Q5VXU9 1444 aa12.06□□□□□ -0.48
CLIP1-202ENST00000358808 SMG6Q86US8 1419 aaKnown RBP12.05□□□□□ -0.48
CLIP1-202ENST00000358808 THEMISQ8N1K5 641 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-202ENST00000358808 CLASRPQ8N2M8 674 aaKnown RBP12.05□□□□□ -0.48
CLIP1-202ENST00000358808 FAM43AQ8N2R8 423 aa12.05□□□□□ -0.48
CLIP1-202ENST00000358808 NACAP1Q9BZK3 213 aa12.05□□□□□ -0.48
CLIP1-202ENST00000358808 ADGRL1O94910 1474 aa12.05□□□□□ -0.48
CLIP1-202ENST00000358808 GRIPAP1Q4V328 841 aa12.05□□□□□ -0.48
CLIP1-202ENST00000358808 TMEM132EQ6IEE7 984 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 RNF214Q8ND24 703 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 TRIM22Q8IYM9 498 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 LETM1O95202 739 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-202ENST00000358808 POTEJP0CG39 1038 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 BMP2KQ9NSY1 1161 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-202ENST00000358808 DACH1Q9UI36 760 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 CDC45O75419 566 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 CCDC57Q2TAC2 916 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 GGNBP2Q9H3C7 697 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 ZBED9Q6R2W3 1325 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 KIF7Q2M1P5 1343 aa12.04□□□□□ -0.48
CLIP1-202ENST00000358808 TIAM1Q13009 1591 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 FAM193AP78312 1265 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 HIP1O00291 1037 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 CCDC91Q7Z6B0 441 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 INCENPQ9NQS7 918 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 PCF11O94913 1555 aaKnown RBP12.03□□□□□ -0.48
CLIP1-202ENST00000358808 SURF6O75683 361 aaKnown RBP12.03□□□□□ -0.48
CLIP1-202ENST00000358808 RUNDC1Q96C34 613 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 ARHGEF11O15085 1522 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 JAKMIP3Q5VZ66 844 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 AKNAQ7Z591 1439 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 CTTNBP2Q8WZ74 1663 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 USP5P45974 858 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 TTLL12Q14166 644 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-202ENST00000358808 PPP4R3AQ6IN85 833 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 JMYQ8N9B5 988 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 NOL7Q9UMY1 257 aaKnown RBP12.03□□□□□ -0.48
CLIP1-202ENST00000358808 COMMD10Q9Y6G5 202 aa12.03□□□□□ -0.48
CLIP1-202ENST00000358808 PLEKHO1Q53GL0 409 aaPredicted RBP12.02□□□□□ -0.48
CLIP1-202ENST00000358808 TMOD2Q9NZR1 351 aa12.02□□□□□ -0.48
CLIP1-202ENST00000358808 PSMD1Q99460 953 aa12.02□□□□□ -0.49
CLIP1-202ENST00000358808 STAMBPO95630 424 aa12.02□□□□□ -0.49
CLIP1-202ENST00000358808 STAC3Q96MF2 364 aa12.02□□□□□ -0.49
CLIP1-202ENST00000358808 CCDC30Q5VVM6 783 aa12.02□□□□□ -0.49
CLIP1-202ENST00000358808 DENND4BO75064 1496 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-202ENST00000358808 TATP17735 454 aaPredicted RBP12.01□□□□□ -0.49
CLIP1-202ENST00000358808 DRC1Q96MC2 740 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 MPHOSPH8Q99549 860 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 TOM1L2Q6ZVM7 507 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 RAPGEF6Q8TEU7 1601 aa12.01□□□□□ -0.49
CLIP1-202ENST00000358808 STK3Q13188 491 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms