RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 NOB1Q9ULX3 412 aaKnown RBP12.59□□□□□ -0.39
PCDH1-202ENST00000357517 DHX16O60231 1041 aaKnown RBP12.58□□□□□ -0.4
PCDH1-202ENST00000357517 LMOD3Q0VAK6 560 aa12.58□□□□□ -0.4
PCDH1-202ENST00000357517 RABEP1Q15276 862 aa12.58□□□□□ -0.4
PCDH1-202ENST00000357517 CCDC186Q7Z3E2 898 aa12.58□□□□□ -0.4
PCDH1-202ENST00000357517 LCMT1Q9UIC8 334 aa12.58□□□□□ -0.4
PCDH1-202ENST00000357517 E2F4Q16254 413 aa12.58□□□□□ -0.4
PCDH1-202ENST00000357517 CCDC27Q2M243 656 aa12.58□□□□□ -0.4
PCDH1-202ENST00000357517 FBXO38Q6PIJ6 1188 aa12.58□□□□□ -0.4
PCDH1-202ENST00000357517 BANK1Q8NDB2 785 aa12.58□□□□□ -0.4
PCDH1-202ENST00000357517 ZNF622Q969S3 477 aaKnown RBP eCLIP12.58□□□□□ -0.4
PCDH1-202ENST00000357517 AP5Z1O43299 807 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 KDM4AO75164 1064 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 SKIDA1Q1XH10 827 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 USP48Q86UV5 1035 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 TRMT1Q9NXH9 659 aaKnown RBP12.57□□□□□ -0.4
PCDH1-202ENST00000357517 NRBP1Q9UHY1 535 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 PHF14O94880 888 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 CYP2E1P05181 493 aaPredicted RBP12.57□□□□□ -0.4
PCDH1-202ENST00000357517 NEK4P51957 841 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 TSPYL1Q9H0U9 437 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 DDX19BQ9UMR2 479 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 NUCB1Q02818 461 aa12.57□□□□□ -0.4
PCDH1-202ENST00000357517 KIAA1107Q9UPP5 1409 aa12.56□□□□□ -0.4
PCDH1-202ENST00000357517 ANKRD30AQ9BXX3 1397 aa12.56□□□□□ -0.4
PCDH1-202ENST00000357517 BMP2KLQ5H9B9 411 aa12.56□□□□□ -0.4
PCDH1-202ENST00000357517 GOLGA6L6A8MZA4 724 aa12.56□□□□□ -0.4
PCDH1-202ENST00000357517 ANKRD65E5RJM6 399 aa12.56□□□□□ -0.4
PCDH1-202ENST00000357517 FIBPO43427 364 aa12.56□□□□□ -0.4
PCDH1-202ENST00000357517 RBM6P78332 1123 aaKnown RBP12.56□□□□□ -0.4
PCDH1-202ENST00000357517 EXOSC9Q06265 439 aaKnown RBP12.56□□□□□ -0.4
PCDH1-202ENST00000357517 CCDC191Q8NCU4 936 aa12.56□□□□□ -0.4
PCDH1-202ENST00000357517 ZNF608Q9ULD9 1512 aaPredicted RBP12.56□□□□□ -0.4
PCDH1-202ENST00000357517 AXDND1Q5T1B0 1012 aaPredicted RBP12.55□□□□□ -0.4
PCDH1-202ENST00000357517 GORABQ5T7V8 394 aa12.55□□□□□ -0.4
PCDH1-202ENST00000357517 ZCCHC17Q9NP64 241 aaKnown RBP12.55□□□□□ -0.4
PCDH1-202ENST00000357517 RALGAPBQ86X10 1494 aa12.55□□□□□ -0.4
PCDH1-202ENST00000357517 CDCA8Q53HL2 280 aa12.55□□□□□ -0.4
PCDH1-202ENST00000357517 SSH1Q8WYL5 1049 aa12.55□□□□□ -0.4
PCDH1-202ENST00000357517 CDK13Q14004 1512 aaKnown RBP12.55□□□□□ -0.4
PCDH1-202ENST00000357517 SMTNL1A8MU46 457 aa12.55□□□□□ -0.4
PCDH1-202ENST00000357517 CDC45O75419 566 aa12.55□□□□□ -0.4
PCDH1-202ENST00000357517 ZNF526Q8TF50 670 aaPredicted RBP12.55□□□□□ -0.4
PCDH1-202ENST00000357517 LARP6Q9BRS8 491 aaKnown RBP12.55□□□□□ -0.4
PCDH1-202ENST00000357517 CWC22Q9HCG8 908 aaKnown RBP12.55□□□□□ -0.4
PCDH1-202ENST00000357517 GCC2Q8IWJ2 1684 aa12.55□□□□□ -0.4
PCDH1-202ENST00000357517 SAMD9Q5K651 1589 aa12.54□□□□□ -0.4
PCDH1-202ENST00000357517 HDAC1Q13547 482 aaPredicted RBP12.54□□□□□ -0.4
PCDH1-202ENST00000357517 ZNF397Q8NF99 534 aaPredicted RBP12.54□□□□□ -0.4
PCDH1-202ENST00000357517 SIRT1Q96EB6 747 aa12.54□□□□□ -0.4
PCDH1-202ENST00000357517 GEMIN8Q9NWZ8 242 aaKnown RBP12.54□□□□□ -0.4
PCDH1-202ENST00000357517 GAPVD1Q14C86 1478 aa12.54□□□□□ -0.4
PCDH1-202ENST00000357517 MYO1CO00159 1063 aa12.54□□□□□ -0.4
PCDH1-202ENST00000357517 C16orf71Q8IYS4 520 aaPredicted RBP12.54□□□□□ -0.4
PCDH1-202ENST00000357517 FAM212AQ96EL1 285 aa12.54□□□□□ -0.4
PCDH1-202ENST00000357517 LRRFIP2Q9Y608 721 aaKnown RBP12.54□□□□□ -0.4
PCDH1-202ENST00000357517 INSRP06213 1382 aa12.53□□□□□ -0.4
PCDH1-202ENST00000357517 TCOF1Q13428 1488 aaKnown RBP12.53□□□□□ -0.4
PCDH1-202ENST00000357517 CYP2C19P33261 490 aa12.53□□□□□ -0.4
PCDH1-202ENST00000357517 CAMK4Q16566 473 aa12.53□□□□□ -0.4
PCDH1-202ENST00000357517 FAM184AQ8NB25 1140 aa12.53□□□□□ -0.4
PCDH1-202ENST00000357517 ST5P78524 1137 aa12.52□□□□□ -0.4
PCDH1-202ENST00000357517 CEP135Q66GS9 1140 aa12.52□□□□□ -0.4
PCDH1-202ENST00000357517 CNPY2Q9Y2B0 182 aa12.52□□□□□ -0.4
PCDH1-202ENST00000357517 MBD5Q9P267 1494 aa12.52□□□□□ -0.4
PCDH1-202ENST00000357517 ELL2O00472 640 aaPredicted RBP12.52□□□□□ -0.41
PCDH1-202ENST00000357517 CT47A1Q5JQC4 288 aaPredicted RBP12.52□□□□□ -0.41
PCDH1-202ENST00000357517 ATF7IPQ6VMQ6 1270 aa12.52□□□□□ -0.41
PCDH1-202ENST00000357517 FAM43BQ6ZT52 329 aaPredicted RBP12.52□□□□□ -0.41
PCDH1-202ENST00000357517 TRIM5Q9C035 493 aa12.52□□□□□ -0.41
PCDH1-202ENST00000357517 EFCC1Q9HA90 598 aa12.52□□□□□ -0.41
PCDH1-202ENST00000357517 CFDP1Q9UEE9 299 aaPredicted RBP12.52□□□□□ -0.41
PCDH1-202ENST00000357517 PZPP20742 1482 aa12.51□□□□□ -0.41
PCDH1-202ENST00000357517 ICE2Q659A1 982 aa12.51□□□□□ -0.41
PCDH1-202ENST00000357517 ERBINQ96RT1 1412 aa12.51□□□□□ -0.41
PCDH1-202ENST00000357517 NOP2P46087 812 aaKnown RBP12.51□□□□□ -0.41
PCDH1-202ENST00000357517 ERCC6LQ2NKX8 1250 aa12.51□□□□□ -0.41
PCDH1-202ENST00000357517 LUZP1Q86V48 1076 aa12.51□□□□□ -0.41
PCDH1-202ENST00000357517 TMX3Q96JJ7 454 aa12.51□□□□□ -0.41
PCDH1-202ENST00000357517 MYCBPQ99417 103 aaPredicted RBP12.51□□□□□ -0.41
PCDH1-202ENST00000357517 ARHGEF11O15085 1522 aa12.51□□□□□ -0.41
PCDH1-202ENST00000357517 DAPK1P53355 1430 aa12.51□□□□□ -0.41
PCDH1-202ENST00000357517 UPF3BQ9BZI7 483 aaKnown RBP12.5□□□□□ -0.41
PCDH1-202ENST00000357517 POLKQ9UBT6 870 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 EXOC6BQ9Y2D4 811 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 KIF14Q15058 1648 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 EPRSP07814 1512 aaKnown RBP12.5□□□□□ -0.41
PCDH1-202ENST00000357517 U2AF1L5P0DN76 240 aaPredicted RBP12.5□□□□□ -0.41
PCDH1-202ENST00000357517 U2AF1Q01081 240 aaKnown RBP eCLIP12.5□□□□□ -0.41
PCDH1-202ENST00000357517 UVSSAQ2YD98 709 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 TEX35Q5T0J7 233 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 ZNF446Q9NWS9 450 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 SCAPERQ9BY12 1400 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 CCDC183Q5T5S1 534 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 USP26Q9BXU7 913 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 ABCC5O15440 1437 aa12.5□□□□□ -0.41
PCDH1-202ENST00000357517 USP27XA6NNY8 438 aa12.49□□□□□ -0.41
PCDH1-202ENST00000357517 TRHP20396 242 aaPredicted RBP12.49□□□□□ -0.41
PCDH1-202ENST00000357517 CASQ1P31415 396 aa12.49□□□□□ -0.41
PCDH1-202ENST00000357517 CCDC34Q96HJ3 373 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms