RNA–Protein interactions for RNA: ENST00000339037.3

LINC01116-202, Transcript of long intergenic non-protein coding RNA 1116, humanhuman

TSL 3 BASIC

Gene LINC01116, Length 838 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01116-202ENST00000339037 NBPF14Q5TI25 921 aa22.42■■□□□ 1.18
LINC01116-202ENST00000339037 TOM1L2Q6ZVM7 507 aa22.41■■□□□ 1.18
LINC01116-202ENST00000339037 TRPM1Q7Z4N2 1603 aa22.41■■□□□ 1.18
LINC01116-202ENST00000339037 NUP188Q5SRE5 1749 aa22.4■■□□□ 1.18
LINC01116-202ENST00000339037 CPSF1Q10570 1443 aaKnown RBP22.4■■□□□ 1.18
LINC01116-202ENST00000339037 DCAF8L1A6NGE4 600 aa22.39■■□□□ 1.17
LINC01116-202ENST00000339037 DDB1Q16531 1140 aa22.39■■□□□ 1.17
LINC01116-202ENST00000339037 SIN3AQ96ST3 1273 aa22.39■■□□□ 1.17
LINC01116-202ENST00000339037 WDR17Q8IZU2 1322 aa22.38■■□□□ 1.17
LINC01116-202ENST00000339037 ZNF692Q9BU19 519 aaPredicted RBP22.38■■□□□ 1.17
LINC01116-202ENST00000339037 LRRC37A3O60309 1634 aa22.38■■□□□ 1.17
LINC01116-202ENST00000339037 TTC21BQ7Z4L5 1316 aa22.37■■□□□ 1.17
LINC01116-202ENST00000339037 KCNH5Q8NCM2 988 aa22.37■■□□□ 1.17
LINC01116-202ENST00000339037 AXIN2Q9Y2T1 843 aa22.37■■□□□ 1.17
LINC01116-202ENST00000339037 PEAK1Q9H792 1746 aa22.37■■□□□ 1.17
LINC01116-202ENST00000339037 NEUROD1Q13562 356 aa22.36■■□□□ 1.17
LINC01116-202ENST00000339037 COL18A1P39060 1754 aa22.35■■□□□ 1.17
LINC01116-202ENST00000339037 TTC21AQ8NDW8 1320 aa22.35■■□□□ 1.17
LINC01116-202ENST00000339037 SOX12O15370 315 aa22.35■■□□□ 1.17
LINC01116-202ENST00000339037 ARHGEF25Q86VW2 580 aa22.35■■□□□ 1.17
LINC01116-202ENST00000339037 CDCA7Q9BWT1 371 aaPredicted RBP22.34■■□□□ 1.17
LINC01116-202ENST00000339037 CSB-PGBD3P0DP91 1061 aa22.32■■□□□ 1.16
LINC01116-202ENST00000339037 KTN1Q86UP2 1357 aaKnown RBP22.32■■□□□ 1.16
LINC01116-202ENST00000339037 AKAP12Q02952 1782 aa22.32■■□□□ 1.16
LINC01116-202ENST00000339037 RGPD3A6NKT7 1758 aaPredicted RBP22.31■■□□□ 1.16
LINC01116-202ENST00000339037 RGPD4Q7Z3J3 1758 aa22.31■■□□□ 1.16
LINC01116-202ENST00000339037 PLSCR1O15162 318 aa22.31■■□□□ 1.16
LINC01116-202ENST00000339037 BCL11BQ9C0K0 894 aaPredicted RBP22.31■■□□□ 1.16
LINC01116-202ENST00000339037 CARD10Q9BWT7 1032 aa22.3■■□□□ 1.16
LINC01116-202ENST00000339037 SPON1Q9HCB6 807 aa22.3■■□□□ 1.16
LINC01116-202ENST00000339037 NFAT5O94916 1531 aa22.3■■□□□ 1.16
LINC01116-202ENST00000339037 WNK3Q9BYP7 1800 aa22.29■■□□□ 1.16
LINC01116-202ENST00000339037 MARCH10Q8NA82 808 aaPredicted RBP22.29■■□□□ 1.16
LINC01116-202ENST00000339037 BCL9O00512 1426 aa22.29■■□□□ 1.16
LINC01116-202ENST00000339037 SBNO2Q9Y2G9 1366 aa22.28■■□□□ 1.16
LINC01116-202ENST00000339037 PTF1AQ7RTS3 328 aa22.28■■□□□ 1.16
LINC01116-202ENST00000339037 PPP1R1BQ9UD71 204 aaPredicted RBP22.28■■□□□ 1.16
LINC01116-202ENST00000339037 SBF2Q86WG5 1849 aa22.28■■□□□ 1.16
LINC01116-202ENST00000339037 KCNQ2O43526 872 aa22.27■■□□□ 1.16
LINC01116-202ENST00000339037 ABCC6O95255 1503 aa22.26■■□□□ 1.15
LINC01116-202ENST00000339037 ANO8Q9HCE9 1232 aaPredicted RBP22.26■■□□□ 1.15
LINC01116-202ENST00000339037 CCDC7Q96M83 1385 aa22.25■■□□□ 1.15
LINC01116-202ENST00000339037 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.25■■□□□ 1.15
LINC01116-202ENST00000339037 MON2Q7Z3U7 1717 aa22.24■■□□□ 1.15
LINC01116-202ENST00000339037 MYCNP04198 464 aaPredicted RBP22.24■■□□□ 1.15
LINC01116-202ENST00000339037 RGPD5Q99666 1765 aa22.24■■□□□ 1.15
LINC01116-202ENST00000339037 EXOC5O00471 708 aa22.23■■□□□ 1.15
LINC01116-202ENST00000339037 CARD11Q9BXL7 1154 aa22.23■■□□□ 1.15
LINC01116-202ENST00000339037 USP31Q70CQ4 1352 aa22.23■■□□□ 1.15
LINC01116-202ENST00000339037 TNS2Q63HR2 1409 aa22.23■■□□□ 1.15
LINC01116-202ENST00000339037 UTRNP46939 3433 aa22.22■■□□□ 1.15
LINC01116-202ENST00000339037 NINLQ9Y2I6 1382 aa22.22■■□□□ 1.15
LINC01116-202ENST00000339037 PROM2Q8N271 834 aa22.21■■□□□ 1.15
LINC01116-202ENST00000339037 CD163L1Q9NR16 1453 aa22.21■■□□□ 1.15
LINC01116-202ENST00000339037 NME9Q86XW9 330 aa22.2■■□□□ 1.14
LINC01116-202ENST00000339037 TMC1Q8TDI8 760 aa22.2■■□□□ 1.14
LINC01116-202ENST00000339037 ERBB3P21860 1342 aa22.2■■□□□ 1.14
LINC01116-202ENST00000339037 HDGFL2Q7Z4V5 671 aaPredicted RBP22.18■■□□□ 1.14
LINC01116-202ENST00000339037 NLRP2Q9NX02 1062 aa22.18■■□□□ 1.14
LINC01116-202ENST00000339037 USP54Q70EL1 1684 aa22.17■■□□□ 1.14
LINC01116-202ENST00000339037 TXNRD1Q16881 649 aa22.17■■□□□ 1.14
LINC01116-202ENST00000339037 CASZ1Q86V15 1759 aa22.17■■□□□ 1.14
LINC01116-202ENST00000339037 EDC4Q6P2E9 1401 aaKnown RBP22.16■■□□□ 1.14
LINC01116-202ENST00000339037 YY1P25490 414 aa22.16■■□□□ 1.14
LINC01116-202ENST00000339037 PDGFDQ9GZP0 370 aaPredicted RBP22.16■■□□□ 1.14
LINC01116-202ENST00000339037 SLC12A5Q9H2X9 1139 aa22.16■■□□□ 1.14
LINC01116-202ENST00000339037 STK32BQ9NY57 414 aa22.15■■□□□ 1.14
LINC01116-202ENST00000339037 TERF2IPQ9NYB0 399 aa22.15■■□□□ 1.14
LINC01116-202ENST00000339037 ZBTB7AO95365 584 aa22.14■■□□□ 1.13
LINC01116-202ENST00000339037 IL2RBP14784 551 aa22.14■■□□□ 1.13
LINC01116-202ENST00000339037 A0A1W2PP64 1363 aa22.13■■□□□ 1.13
LINC01116-202ENST00000339037 TONSLQ96HA7 1378 aa22.13■■□□□ 1.13
LINC01116-202ENST00000339037 ANKRD24Q8TF21 1146 aa22.13■■□□□ 1.13
LINC01116-202ENST00000339037 LTN1O94822 1766 aa22.12■■□□□ 1.13
LINC01116-202ENST00000339037 NHSQ6T4R5 1651 aa22.12■■□□□ 1.13
LINC01116-202ENST00000339037 SLC15A2Q16348 729 aa22.12■■□□□ 1.13
LINC01116-202ENST00000339037 ACSBG1Q96GR2 724 aa22.11■■□□□ 1.13
LINC01116-202ENST00000339037 PUS7Q96PZ0 661 aaKnown RBP22.1■■□□□ 1.13
LINC01116-202ENST00000339037 PTGER2P43116 358 aa22.09■■□□□ 1.13
LINC01116-202ENST00000339037 ATF5Q9Y2D1 282 aaPredicted RBP22.08■■□□□ 1.13
LINC01116-202ENST00000339037 MTFR1LQ9H019 292 aa22.06■■□□□ 1.12
LINC01116-202ENST00000339037 MYOM1P52179 1685 aa22.06■■□□□ 1.12
LINC01116-202ENST00000339037 GOLGB1Q14789 3259 aaKnown RBP22.06■■□□□ 1.12
LINC01116-202ENST00000339037 IP6K1Q92551 441 aa22.05■■□□□ 1.12
LINC01116-202ENST00000339037 TESK2Q96S53 571 aa22.03■■□□□ 1.12
LINC01116-202ENST00000339037 BTAF1O14981 1849 aa22.02■■□□□ 1.12
LINC01116-202ENST00000339037 LTV1Q96GA3 475 aaPredicted RBP22.02■■□□□ 1.12
LINC01116-202ENST00000339037 COG3Q96JB2 828 aa22.02■■□□□ 1.12
LINC01116-202ENST00000339037 PAPPAQ13219 1627 aa22.02■■□□□ 1.11
LINC01116-202ENST00000339037 ST20-MTHFSA0A0A6YYL1 179 aa22.01■■□□□ 1.11
LINC01116-202ENST00000339037 FHDC1Q9C0D6 1143 aaPredicted RBP22.01■■□□□ 1.11
LINC01116-202ENST00000339037 SLC24A1O60721 1099 aa22■■□□□ 1.11
LINC01116-202ENST00000339037 DDX54Q8TDD1 881 aaKnown RBP22■■□□□ 1.11
LINC01116-202ENST00000339037 SGIP1Q9BQI5 828 aa22■■□□□ 1.11
LINC01116-202ENST00000339037 FAM208AQ9UK61 1670 aaKnown RBP22■■□□□ 1.11
LINC01116-202ENST00000339037 KAT6BQ8WYB5 2073 aa21.99■■□□□ 1.11
LINC01116-202ENST00000339037 SYT17Q9BSW7 474 aa21.99■■□□□ 1.11
LINC01116-202ENST00000339037 MAP3K19Q56UN5 1328 aa21.99■■□□□ 1.11
LINC01116-202ENST00000339037 ATXN8OSP0DMR3 200 aa21.98■■□□□ 1.11
LINC01116-202ENST00000339037 AMPHP49418 695 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms