RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 IMMTQ16891 758 aaKnown RBP16.33■□□□□ 0.2
CSPG4-201ENST00000308508 PDZRN3Q9UPQ7 1066 aa16.33■□□□□ 0.2
CSPG4-201ENST00000308508 LARP1BQ659C4 914 aaKnown RBP16.32■□□□□ 0.2
CSPG4-201ENST00000308508 SURF6O75683 361 aaKnown RBP16.32■□□□□ 0.2
CSPG4-201ENST00000308508 PDE3AQ14432 1141 aa16.32■□□□□ 0.2
CSPG4-201ENST00000308508 MSH5O43196 834 aa16.32■□□□□ 0.2
CSPG4-201ENST00000308508 CCDC30Q5VVM6 783 aa16.32■□□□□ 0.2
CSPG4-201ENST00000308508 CDKL5O76039 1030 aa16.32■□□□□ 0.2
CSPG4-201ENST00000308508 BACH2Q9BYV9 841 aa16.32■□□□□ 0.2
CSPG4-201ENST00000308508 STAMBPO95630 424 aa16.31■□□□□ 0.2
CSPG4-201ENST00000308508 FILIP1Q7Z7B0 1213 aa16.31■□□□□ 0.2
CSPG4-201ENST00000308508 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.31■□□□□ 0.2
CSPG4-201ENST00000308508 MCM4P33991 863 aa16.31■□□□□ 0.2
CSPG4-201ENST00000308508 CASQ1P31415 396 aa16.31■□□□□ 0.2
CSPG4-201ENST00000308508 DNAJC2Q99543 621 aaKnown RBP16.31■□□□□ 0.2
CSPG4-201ENST00000308508 MTMR7Q9Y216 660 aa16.31■□□□□ 0.2
CSPG4-201ENST00000308508 NOL7Q9UMY1 257 aaKnown RBP16.31■□□□□ 0.2
CSPG4-201ENST00000308508 MINK1Q8N4C8 1332 aaPredicted RBP16.31■□□□□ 0.2
CSPG4-201ENST00000308508 CBX1P83916 185 aa16.3■□□□□ 0.2
CSPG4-201ENST00000308508 TICAM2Q86XR7 235 aa16.3■□□□□ 0.2
CSPG4-201ENST00000308508 GNAI2P04899 355 aa16.3■□□□□ 0.2
CSPG4-201ENST00000308508 MAP3K11Q16584 847 aa16.3■□□□□ 0.2
CSPG4-201ENST00000308508 SPATA24Q86W54 205 aa16.3■□□□□ 0.2
CSPG4-201ENST00000308508 MPNDQ8N594 471 aa16.29■□□□□ 0.2
CSPG4-201ENST00000308508 CEP63Q96MT8 703 aa16.29■□□□□ 0.2
CSPG4-201ENST00000308508 CCDC88BA6NC98 1476 aa16.29■□□□□ 0.2
CSPG4-201ENST00000308508 KIF5CO60282 957 aa16.29■□□□□ 0.2
CSPG4-201ENST00000308508 SFPQP23246 707 aaKnown RBP eCLIP16.29■□□□□ 0.2
CSPG4-201ENST00000308508 PPM1EQ8WY54 764 aa16.29■□□□□ 0.2
CSPG4-201ENST00000308508 SEPT11Q9NVA2 429 aaKnown RBP16.29■□□□□ 0.2
CSPG4-201ENST00000308508 AIMP1Q12904 312 aaKnown RBP16.28■□□□□ 0.2
CSPG4-201ENST00000308508 SRCIN1Q9C0H9 1055 aa16.28■□□□□ 0.2
CSPG4-201ENST00000308508 CCDC69A6NI79 296 aa16.28■□□□□ 0.2
CSPG4-201ENST00000308508 SYTL4Q96C24 671 aaPredicted RBP16.28■□□□□ 0.2
CSPG4-201ENST00000308508 GCOM1H8Y6P7 765 aaPredicted RBP16.28■□□□□ 0.2
CSPG4-201ENST00000308508 MYZAPP0CAP1 466 aa16.28■□□□□ 0.2
CSPG4-201ENST00000308508 EIF5P55010 431 aaKnown RBP16.28■□□□□ 0.2
CSPG4-201ENST00000308508 BMP2KQ9NSY1 1161 aaPredicted RBP16.28■□□□□ 0.2
CSPG4-201ENST00000308508 FHOD3Q2V2M9 1422 aa16.28■□□□□ 0.2
CSPG4-201ENST00000308508 ZSCAN31Q96LW9 406 aaPredicted RBP16.27■□□□□ 0.2
CSPG4-201ENST00000308508 RAPGEF2Q9Y4G8 1499 aa16.27■□□□□ 0.2
CSPG4-201ENST00000308508 CFAP100Q494V2 611 aa16.27■□□□□ 0.2
CSPG4-201ENST00000308508 HMOX1P09601 288 aa16.27■□□□□ 0.2
CSPG4-201ENST00000308508 PRDM10Q9NQV6 1147 aa16.27■□□□□ 0.2
CSPG4-201ENST00000308508 CETN2P41208 172 aa16.27■□□□□ 0.19
CSPG4-201ENST00000308508 GPATCH11Q8N954 259 aa16.27■□□□□ 0.19
CSPG4-201ENST00000308508 CCDC57Q2TAC2 916 aa16.27■□□□□ 0.19
CSPG4-201ENST00000308508 PPP6R1Q9UPN7 881 aa16.27■□□□□ 0.19
CSPG4-201ENST00000308508 STK3Q13188 491 aa16.26■□□□□ 0.19
CSPG4-201ENST00000308508 SMC1AQ14683 1233 aaKnown RBP16.26■□□□□ 0.19
CSPG4-201ENST00000308508 ZHX3Q9H4I2 956 aa16.26■□□□□ 0.19
CSPG4-201ENST00000308508 SPA17Q15506 151 aa16.26■□□□□ 0.19
CSPG4-201ENST00000308508 POTEB2H3BUK9 544 aa16.26■□□□□ 0.19
CSPG4-201ENST00000308508 CCDC158Q5M9N0 1113 aa16.26■□□□□ 0.19
CSPG4-201ENST00000308508 LUZP1Q86V48 1076 aa16.26■□□□□ 0.19
CSPG4-201ENST00000308508 NACAP1Q9BZK3 213 aa16.26■□□□□ 0.19
CSPG4-201ENST00000308508 SYCE3A1L190 88 aa16.25■□□□□ 0.19
CSPG4-201ENST00000308508 TTC39AQ5SRH9 613 aa16.25■□□□□ 0.19
CSPG4-201ENST00000308508 PSME1Q06323 249 aa16.25■□□□□ 0.19
CSPG4-201ENST00000308508 IFFO1Q0D2I5 559 aa16.25■□□□□ 0.19
CSPG4-201ENST00000308508 CCDC113Q9H0I3 377 aa16.25■□□□□ 0.19
CSPG4-201ENST00000308508 RNF187Q5TA31 235 aaPredicted RBP16.24■□□□□ 0.19
CSPG4-201ENST00000308508 CEP131Q9UPN4 1083 aa16.24■□□□□ 0.19
CSPG4-201ENST00000308508 POTEJP0CG39 1038 aa16.24■□□□□ 0.19
CSPG4-201ENST00000308508 RAPGEF4Q8WZA2 1011 aa16.24■□□□□ 0.19
CSPG4-201ENST00000308508 CCDC175P0C221 793 aa16.24■□□□□ 0.19
CSPG4-201ENST00000308508 MEX3CQ5U5Q3 659 aaKnown RBP16.24■□□□□ 0.19
CSPG4-201ENST00000308508 GNL3LQ9NVN8 582 aaKnown RBP16.24■□□□□ 0.19
CSPG4-201ENST00000308508 WASHC2AQ641Q2 1341 aa16.24■□□□□ 0.19
CSPG4-201ENST00000308508 BLOC1S2Q6QNY1 142 aa16.23■□□□□ 0.19
CSPG4-201ENST00000308508 GIGYF2Q6Y7W6 1299 aaKnown RBP16.23■□□□□ 0.19
CSPG4-201ENST00000308508 CCDC83Q8IWF9 413 aa16.23■□□□□ 0.19
CSPG4-201ENST00000308508 WASF1Q92558 559 aa16.23■□□□□ 0.19
CSPG4-201ENST00000308508 STAC3Q96MF2 364 aa16.23■□□□□ 0.19
CSPG4-201ENST00000308508 CUX1P39880 1505 aa16.23■□□□□ 0.19
CSPG4-201ENST00000308508 KRT32Q14532 448 aa16.23■□□□□ 0.19
CSPG4-201ENST00000308508 CCT4P50991 539 aaKnown RBP16.23■□□□□ 0.19
CSPG4-201ENST00000308508 CCDC183Q5T5S1 534 aa16.22■□□□□ 0.19
CSPG4-201ENST00000308508 SOGA3Q5TF21 947 aa16.22■□□□□ 0.19
CSPG4-201ENST00000308508 PDRG1Q9NUG6 133 aa16.22■□□□□ 0.19
CSPG4-201ENST00000308508 RRBP1Q9P2E9 1410 aaKnown RBP16.22■□□□□ 0.19
CSPG4-201ENST00000308508 PPP1R12BO60237 982 aaPredicted RBP16.22■□□□□ 0.19
CSPG4-201ENST00000308508 IPO4Q8TEX9 1081 aaKnown RBP16.22■□□□□ 0.19
CSPG4-201ENST00000308508 ZSCAN25Q6NSZ9 544 aa16.22■□□□□ 0.19
CSPG4-201ENST00000308508 KIF6Q6ZMV9 814 aa16.22■□□□□ 0.19
CSPG4-201ENST00000308508 NEMFO60524 1076 aa16.21■□□□□ 0.19
CSPG4-201ENST00000308508 SCAPERQ9BY12 1400 aa16.21■□□□□ 0.19
CSPG4-201ENST00000308508 NEBLO76041 1014 aa16.21■□□□□ 0.19
CSPG4-201ENST00000308508 ADAMTS8Q9UP79 889 aa16.21■□□□□ 0.19
CSPG4-201ENST00000308508 NOB1Q9ULX3 412 aaKnown RBP16.21■□□□□ 0.19
CSPG4-201ENST00000308508 SMARCA2P51531 1590 aa16.21■□□□□ 0.18
CSPG4-201ENST00000308508 POLR3GO15318 223 aaPredicted RBP16.21■□□□□ 0.18
CSPG4-201ENST00000308508 TRIM21P19474 475 aaKnown RBP16.21■□□□□ 0.18
CSPG4-201ENST00000308508 SPECC1LQ69YQ0 1117 aa16.21■□□□□ 0.18
CSPG4-201ENST00000308508 FEZ1Q99689 392 aa16.21■□□□□ 0.18
CSPG4-201ENST00000308508 VPS36Q86VN1 386 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 ANO10Q9NW15 660 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 KIF4BQ2VIQ3 1234 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 TIGD1Q96MW7 591 aa16.2■□□□□ 0.18
CSPG4-201ENST00000308508 GAS2L2Q8NHY3 880 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms