RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CCDC171Q6TFL3 1326 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 LUC7L3O95232 432 aaKnown RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 MAP2K1Q02750 393 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CEP128Q6ZU80 1094 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC110Q8TBZ0 833 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 SREK1Q8WXA9 508 aaKnown RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 EBAG9O00559 213 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 PLEKHG5O94827 1062 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 NLRP5P59047 1200 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 SPC24Q8NBT2 197 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 A0A1B0GUL7 405 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 RRP1P56182 461 aaKnown RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC65Q8IXS2 484 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 BICD2Q8TD16 824 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CETN2P41208 172 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 ARHGAP25P42331 645 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 PTPN14Q15678 1187 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 GRIPAP1Q4V328 841 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 IFT74Q96LB3 600 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 CNGA1P29973 690 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 SDF4Q9BRK5 362 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 LIMCH1Q9UPQ0 1083 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 TRIP11Q15643 1979 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 ASXL3Q9C0F0 2248 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 TRDNQ13061 729 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 POLE3Q9NRF9 147 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 SUPT6HQ7KZ85 1726 aaKnown RBP5.68□□□□□ -1.5
CSMD3-201ENST00000297405 ARFGAP2Q8N6H7 521 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 TUBB2AQ13885 445 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC181Q5TID7 509 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 TUBB2BQ9BVA1 445 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 BCL11BQ9C0K0 894 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-201ENST00000297405 STMN1P16949 149 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 C22orf23Q9BZE7 217 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 SMC3Q9UQE7 1217 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 SFPQP23246 707 aaKnown RBP eCLIP5.68□□□□□ -1.5
CSMD3-201ENST00000297405 PPFIBP1Q86W92 1011 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 ZNF397Q8NF99 534 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-201ENST00000297405 MPDZO75970 2070 aa5.68□□□□□ -1.5
CSMD3-201ENST00000297405 CEP120Q8N960 986 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 PPFIBP2Q8ND30 876 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 STIM2Q9P246 746 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 KIF5CO60282 957 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 CTCFLQ8NI51 663 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-201ENST00000297405 DZIP1Q86YF9 867 aaKnown RBP5.67□□□□□ -1.5
CSMD3-201ENST00000297405 PRM3Q9NNZ6 103 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 KIAA0100Q14667 2235 aaKnown RBP5.67□□□□□ -1.5
CSMD3-201ENST00000297405 SEC62Q99442 399 aaKnown RBP5.67□□□□□ -1.5
CSMD3-201ENST00000297405 DNAI2Q9GZS0 605 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 CEP104O60308 925 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 MAP7Q14244 749 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 IRX4P78413 519 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 WHAMMP3Q1A5X7 153 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 HSP90AB2PQ58FF8 381 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 AKNAQ7Z591 1439 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 NOL3O60936 208 aaKnown RBP5.67□□□□□ -1.5
CSMD3-201ENST00000297405 LMOD2Q6P5Q4 547 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 ZNF365Q70YC5 407 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 ERC2O15083 957 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 PAXIP1Q6ZW49 1069 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-201ENST00000297405 CROCCP2Q86T23 111 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 VCXQ9H320 206 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 THEGQ9P2T0 379 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 VPS36Q86VN1 386 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 CEP57L1Q8IYX8 460 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.67□□□□□ -1.5
CSMD3-201ENST00000297405 MAGEC2Q9UBF1 373 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-201ENST00000297405 CLIP2Q9UDT6 1046 aa5.67□□□□□ -1.5
CSMD3-201ENST00000297405 CPLX1O14810 134 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 TRIM35Q9UPQ4 493 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC174Q6PII3 467 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 PCMTD1Q96MG8 357 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 PLVAPQ9BX97 442 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 ERCC3P19447 782 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 GPATCH11Q8N954 259 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 HOXA7P31268 230 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 LRCH2Q5VUJ6 765 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 AP1ARQ63HQ0 302 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 GBP7Q8N8V2 638 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 ZNF428Q96B54 188 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 ZHX1Q9UKY1 873 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 RABGAP1Q9Y3P9 1069 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 DNAJC8O75937 253 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 KRT85P78386 507 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 UVSSAQ2YD98 709 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 PYM1Q9BRP8 204 aaKnown RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 AMOTL1Q8IY63 956 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 ITGB1BP2Q9UKP3 347 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 PSMD7P51665 324 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 ZKSCAN2Q63HK3 967 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 MACROD2A1Z1Q3 448 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 NAP1L1P55209 391 aaKnown RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 TRIM21P19474 475 aaKnown RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 RMDN2Q96LZ7 410 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 TPRP12270 2363 aaKnown RBP5.66□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC30Q5VVM6 783 aa5.66□□□□□ -1.5
CSMD3-201ENST00000297405 PIP4K2BP78356 416 aa5.65□□□□□ -1.5
CSMD3-201ENST00000297405 NAP1L3Q99457 506 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-201ENST00000297405 RABEP2Q9H5N1 569 aa5.65□□□□□ -1.5
CSMD3-201ENST00000297405 ATP6V1AP38606 617 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms