RNA–Protein interactions for RNA: ENST00000295226.1

CCDC140-201, Transcript of coiled-coil domain containing 140, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC140, Length 1,699 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140-201ENST00000295226 SMG6Q86US8 1419 aaKnown RBP20.35■□□□□ 0.85
CCDC140-201ENST00000295226 CPDO75976 1380 aa20.34■□□□□ 0.85
CCDC140-201ENST00000295226 CFAP53Q96M91 514 aa20.34■□□□□ 0.85
CCDC140-201ENST00000295226 FLT4P35916 1363 aa20.34■□□□□ 0.85
CCDC140-201ENST00000295226 RGPD5Q99666 1765 aa20.33■□□□□ 0.84
CCDC140-201ENST00000295226 SPATA31A6Q5VVP1 1343 aa20.32■□□□□ 0.84
CCDC140-201ENST00000295226 CDK12Q9NYV4 1490 aaPredicted RBP20.32■□□□□ 0.84
CCDC140-201ENST00000295226 EIF4A2Q14240 407 aaKnown RBP20.32■□□□□ 0.84
CCDC140-201ENST00000295226 LRP6O75581 1613 aa20.31■□□□□ 0.84
CCDC140-201ENST00000295226 DIAPH1O60610 1272 aaKnown RBP20.31■□□□□ 0.84
CCDC140-201ENST00000295226 COL18A1P39060 1754 aa20.31■□□□□ 0.84
CCDC140-201ENST00000295226 COL3A1P02461 1466 aaPredicted RBP20.31■□□□□ 0.84
CCDC140-201ENST00000295226 IL13P35225 146 aa20.3■□□□□ 0.84
CCDC140-201ENST00000295226 RTL1A6NKG5 1358 aa20.29■□□□□ 0.84
CCDC140-201ENST00000295226 INSRP06213 1382 aa20.29■□□□□ 0.84
CCDC140-201ENST00000295226 U2SURPO15042 1029 aaKnown RBP20.29■□□□□ 0.84
CCDC140-201ENST00000295226 FAM9BQ8IZU0 186 aa20.29■□□□□ 0.84
CCDC140-201ENST00000295226 PNISRQ8TF01 805 aaKnown RBP20.29■□□□□ 0.84
CCDC140-201ENST00000295226 ANKRD24Q8TF21 1146 aa20.29■□□□□ 0.84
CCDC140-201ENST00000295226 C8orf37Q96NL8 207 aa20.29■□□□□ 0.84
CCDC140-201ENST00000295226 CAMTA1Q9Y6Y1 1673 aa20.28■□□□□ 0.84
CCDC140-201ENST00000295226 KIF24Q5T7B8 1368 aa20.28■□□□□ 0.84
CCDC140-201ENST00000295226 BTG4Q9NY30 223 aa20.28■□□□□ 0.84
CCDC140-201ENST00000295226 STRN4Q9NRL3 753 aa20.27■□□□□ 0.84
CCDC140-201ENST00000295226 MEX3CQ5U5Q3 659 aaKnown RBP20.26■□□□□ 0.83
CCDC140-201ENST00000295226 NGLY1Q96IV0 654 aa20.26■□□□□ 0.83
CCDC140-201ENST00000295226 LMO7Q8WWI1 1683 aa20.25■□□□□ 0.83
CCDC140-201ENST00000295226 ADAMTS8Q9UP79 889 aa20.25■□□□□ 0.83
CCDC140-201ENST00000295226 BLMP54132 1417 aaPredicted RBP20.24■□□□□ 0.83
CCDC140-201ENST00000295226 U2AF1L5P0DN76 240 aaPredicted RBP20.24■□□□□ 0.83
CCDC140-201ENST00000295226 CSB-PGBD3P0DP91 1061 aa20.24■□□□□ 0.83
CCDC140-201ENST00000295226 EVA1CP58658 441 aa20.24■□□□□ 0.83
CCDC140-201ENST00000295226 U2AF1Q01081 240 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC140-201ENST00000295226 WDR43Q15061 677 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC140-201ENST00000295226 USHBP1Q8N6Y0 703 aa20.24■□□□□ 0.83
CCDC140-201ENST00000295226 EYA1Q99502 592 aa20.24■□□□□ 0.83
CCDC140-201ENST00000295226 ERBB3P21860 1342 aa20.24■□□□□ 0.83
CCDC140-201ENST00000295226 COL14A1Q05707 1796 aaKnown RBP20.24■□□□□ 0.83
CCDC140-201ENST00000295226 HMOX1P09601 288 aa20.23■□□□□ 0.83
CCDC140-201ENST00000295226 NBPF6Q5VWK0 638 aa20.23■□□□□ 0.83
CCDC140-201ENST00000295226 ILDR1Q86SU0 546 aaPredicted RBP20.23■□□□□ 0.83
CCDC140-201ENST00000295226 NBPF4Q96M43 638 aa20.23■□□□□ 0.83
CCDC140-201ENST00000295226 NUDCQ9Y266 331 aa20.23■□□□□ 0.83
CCDC140-201ENST00000295226 RGPD2P0DJD1 1756 aa20.23■□□□□ 0.83
CCDC140-201ENST00000295226 SENP3-EIF4A1A0A087X0R7 540 aa20.22■□□□□ 0.83
CCDC140-201ENST00000295226 LARP1Q6PKG0 1096 aaKnown RBP20.22■□□□□ 0.83
CCDC140-201ENST00000295226 AEBP1Q8IUX7 1158 aa20.22■□□□□ 0.83
CCDC140-201ENST00000295226 COL5A2P05997 1499 aaPredicted RBP20.21■□□□□ 0.83
CCDC140-201ENST00000295226 NLRP2Q9NX02 1062 aa20.21■□□□□ 0.83
CCDC140-201ENST00000295226 PLCH1Q4KWH8 1693 aa20.2■□□□□ 0.82
CCDC140-201ENST00000295226 SULT6B1Q6IMI4 303 aa20.2■□□□□ 0.82
CCDC140-201ENST00000295226 ABCC6O95255 1503 aa20.19■□□□□ 0.82
CCDC140-201ENST00000295226 TOM1L2Q6ZVM7 507 aa20.19■□□□□ 0.82
CCDC140-201ENST00000295226 CCDC146Q8IYE0 955 aa20.19■□□□□ 0.82
CCDC140-201ENST00000295226 WDR17Q8IZU2 1322 aa20.18■□□□□ 0.82
CCDC140-201ENST00000295226 USP35Q9P2H5 1018 aa20.18■□□□□ 0.82
CCDC140-201ENST00000295226 SLIT2O94813 1529 aa20.17■□□□□ 0.82
CCDC140-201ENST00000295226 IGSF1Q8N6C5 1336 aa20.17■□□□□ 0.82
CCDC140-201ENST00000295226 FNBP4Q8N3X1 1017 aaPredicted RBP20.17■□□□□ 0.82
CCDC140-201ENST00000295226 AFF2P51816 1311 aa20.16■□□□□ 0.82
CCDC140-201ENST00000295226 USP21Q9UK80 565 aa20.16■□□□□ 0.82
CCDC140-201ENST00000295226 RGPD1P0DJD0 1748 aa20.16■□□□□ 0.82
CCDC140-201ENST00000295226 UNC5CLQ8IV45 518 aa20.16■□□□□ 0.82
CCDC140-201ENST00000295226 BCL9LQ86UU0 1499 aa20.15■□□□□ 0.82
CCDC140-201ENST00000295226 RSPH6AQ9H0K4 717 aa20.15■□□□□ 0.82
CCDC140-201ENST00000295226 NRAPQ86VF7 1730 aa20.14■□□□□ 0.81
CCDC140-201ENST00000295226 PRKAR2BP31323 418 aa20.13■□□□□ 0.81
CCDC140-201ENST00000295226 CCDC9Q9Y3X0 531 aaKnown RBP20.13■□□□□ 0.81
CCDC140-201ENST00000295226 NWD2Q9ULI1 1742 aa20.13■□□□□ 0.81
CCDC140-201ENST00000295226 FCHSD2O94868 740 aa20.12■□□□□ 0.81
CCDC140-201ENST00000295226 CARD10Q9BWT7 1032 aa20.12■□□□□ 0.81
CCDC140-201ENST00000295226 CRB1P82279 1406 aa20.11■□□□□ 0.81
CCDC140-201ENST00000295226 PHACTR3Q96KR7 559 aa20.11■□□□□ 0.81
CCDC140-201ENST00000295226 PLEKHF1Q96S99 279 aa20.11■□□□□ 0.81
CCDC140-201ENST00000295226 YTHDC1Q96MU7 727 aaKnown RBP20.1■□□□□ 0.81
CCDC140-201ENST00000295226 KDRP35968 1356 aa20.1■□□□□ 0.81
CCDC140-201ENST00000295226 FAM208AQ9UK61 1670 aaKnown RBP20.08■□□□□ 0.81
CCDC140-201ENST00000295226 RUNDC1Q96C34 613 aa20.08■□□□□ 0.81
CCDC140-201ENST00000295226 SPATA31A1Q5TZJ5 1347 aa20.08■□□□□ 0.8
CCDC140-201ENST00000295226 SPATA31A5Q5VU36 1347 aa20.08■□□□□ 0.8
CCDC140-201ENST00000295226 SPATA31A7Q8IWB4 1347 aa20.08■□□□□ 0.8
CCDC140-201ENST00000295226 VPS72Q15906 364 aa20.07■□□□□ 0.8
CCDC140-201ENST00000295226 RRP7AQ9Y3A4 280 aaKnown RBP20.07■□□□□ 0.8
CCDC140-201ENST00000295226 SALL2Q9Y467 1007 aaPredicted RBP20.07■□□□□ 0.8
CCDC140-201ENST00000295226 NCAPD2Q15021 1401 aa20.07■□□□□ 0.8
CCDC140-201ENST00000295226 APAF1O14727 1248 aa20.07■□□□□ 0.8
CCDC140-201ENST00000295226 TCP11L2Q8N4U5 519 aa20.06■□□□□ 0.8
CCDC140-201ENST00000295226 RAPGEF4Q8WZA2 1011 aa20.06■□□□□ 0.8
CCDC140-201ENST00000295226 QTRT2Q9H974 415 aaKnown RBP20.06■□□□□ 0.8
CCDC140-201ENST00000295226 MEGF6O75095 1541 aa20.05■□□□□ 0.8
CCDC140-201ENST00000295226 NEUROD2Q15784 382 aa20.05■□□□□ 0.8
CCDC140-201ENST00000295226 PNNQ9H307 717 aaKnown RBP20.04■□□□□ 0.8
CCDC140-201ENST00000295226 MAPK8IP3Q9UPT6 1336 aa20.04■□□□□ 0.8
CCDC140-201ENST00000295226 TATP17735 454 aaPredicted RBP20.03■□□□□ 0.8
CCDC140-201ENST00000295226 TRPC5Q9UL62 973 aaPredicted RBP20.03■□□□□ 0.8
CCDC140-201ENST00000295226 IL2RBP14784 551 aa20.03■□□□□ 0.8
CCDC140-201ENST00000295226 HNRNPUQ00839 825 aaKnown RBP eCLIP20.03■□□□□ 0.8
CCDC140-201ENST00000295226 FAM98CQ17RN3 349 aaKnown RBP20.03■□□□□ 0.8
CCDC140-201ENST00000295226 MTHFSDQ2M296 383 aaKnown RBP20.03■□□□□ 0.8
CCDC140-201ENST00000295226 RGS17Q9UGC6 210 aaPredicted RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms