RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 SOX12O15370 315 aa33.6■■■□□ 2.97
SSBP4-201ENST00000270061 NME9Q86XW9 330 aa33.6■■■□□ 2.97
SSBP4-201ENST00000270061 COL18A1P39060 1754 aa33.58■■■□□ 2.97
SSBP4-201ENST00000270061 ZRANB1Q9UGI0 708 aa33.58■■■□□ 2.97
SSBP4-201ENST00000270061 COL5A2P05997 1499 aaPredicted RBP33.57■■■□□ 2.96
SSBP4-201ENST00000270061 NFAT5O94916 1531 aa33.57■■■□□ 2.96
SSBP4-201ENST00000270061 LARP1Q6PKG0 1096 aaKnown RBP33.56■■■□□ 2.96
SSBP4-201ENST00000270061 ANKRD36BQ8N2N9 1353 aa33.56■■■□□ 2.96
SSBP4-201ENST00000270061 RGPD5Q99666 1765 aa33.55■■■□□ 2.96
SSBP4-201ENST00000270061 KRT27Q7Z3Y8 459 aa33.55■■■□□ 2.96
SSBP4-201ENST00000270061 ARHGEF25Q86VW2 580 aa33.55■■■□□ 2.96
SSBP4-201ENST00000270061 USP35Q9P2H5 1018 aa33.55■■■□□ 2.96
SSBP4-201ENST00000270061 THSD7AQ9UPZ6 1657 aa33.55■■■□□ 2.96
SSBP4-201ENST00000270061 PRKRIP1Q9H875 184 aaPredicted RBP33.52■■■□□ 2.96
SSBP4-201ENST00000270061 LTN1O94822 1766 aa33.51■■■□□ 2.95
SSBP4-201ENST00000270061 MYOM1P52179 1685 aa33.49■■■□□ 2.95
SSBP4-201ENST00000270061 AXIN2Q9Y2T1 843 aa33.49■■■□□ 2.95
SSBP4-201ENST00000270061 CENPBP07199 599 aaPredicted RBP33.48■■■□□ 2.95
SSBP4-201ENST00000270061 OVOS2A0A0J9YW53 1432 aa33.48■■■□□ 2.95
SSBP4-201ENST00000270061 CRB1P82279 1406 aa33.48■■■□□ 2.95
SSBP4-201ENST00000270061 OVOS2Q6IE36 1432 aa33.48■■■□□ 2.95
SSBP4-201ENST00000270061 BARGINQ6ZT62 677 aa33.47■■■□□ 2.95
SSBP4-201ENST00000270061 CCDC125Q86Z20 511 aa33.47■■■□□ 2.95
SSBP4-201ENST00000270061 TCP11L2Q8N4U5 519 aa33.47■■■□□ 2.95
SSBP4-201ENST00000270061 YTHDC1Q96MU7 727 aaKnown RBP33.47■■■□□ 2.95
SSBP4-201ENST00000270061 THRAP3Q9Y2W1 955 aaKnown RBP33.45■■■□□ 2.95
SSBP4-201ENST00000270061 ABCC6O95255 1503 aa33.45■■■□□ 2.95
SSBP4-201ENST00000270061 TOM1L2Q6ZVM7 507 aa33.42■■■□□ 2.94
SSBP4-201ENST00000270061 COG3Q96JB2 828 aa33.42■■■□□ 2.94
SSBP4-201ENST00000270061 WDR17Q8IZU2 1322 aa33.42■■■□□ 2.94
SSBP4-201ENST00000270061 BLMP54132 1417 aaPredicted RBP33.41■■■□□ 2.94
SSBP4-201ENST00000270061 KIF20BQ96Q89 1820 aa33.39■■■□□ 2.94
SSBP4-201ENST00000270061 CSB-PGBD3P0DP91 1061 aa33.38■■■□□ 2.93
SSBP4-201ENST00000270061 PARP4Q9UKK3 1724 aaKnown RBP33.37■■■□□ 2.93
SSBP4-201ENST00000270061 PER1O15534 1290 aaPredicted RBP33.37■■■□□ 2.93
SSBP4-201ENST00000270061 FAM182BQ5T319 152 aa33.37■■■□□ 2.93
SSBP4-201ENST00000270061 WNK3Q9BYP7 1800 aa33.35■■■□□ 2.93
SSBP4-201ENST00000270061 FYB1O15117 783 aa33.34■■■□□ 2.93
SSBP4-201ENST00000270061 SF3B2Q13435 895 aaKnown RBP33.34■■■□□ 2.93
SSBP4-201ENST00000270061 PDE3BQ13370 1112 aa33.34■■■□□ 2.93
SSBP4-201ENST00000270061 GGNBP2Q9H3C7 697 aa33.32■■■□□ 2.92
SSBP4-201ENST00000270061 CARD10Q9BWT7 1032 aa33.32■■■□□ 2.92
SSBP4-201ENST00000270061 PANK3Q9H999 370 aa33.32■■■□□ 2.92
SSBP4-201ENST00000270061 CARD14Q9BXL6 1004 aa33.31■■■□□ 2.92
SSBP4-201ENST00000270061 NSD3Q9BZ95 1437 aa33.3■■■□□ 2.92
SSBP4-201ENST00000270061 ERBB3P21860 1342 aa33.3■■■□□ 2.92
SSBP4-201ENST00000270061 RGPD1P0DJD0 1748 aa33.29■■■□□ 2.92
SSBP4-201ENST00000270061 FAM196AQ6ZSG2 479 aa33.27■■■□□ 2.92
SSBP4-201ENST00000270061 LRRC37A3O60309 1634 aa33.27■■■□□ 2.92
SSBP4-201ENST00000270061 RALBP1Q15311 655 aa33.26■■■□□ 2.92
SSBP4-201ENST00000270061 IP6K1Q92551 441 aa33.26■■■□□ 2.91
SSBP4-201ENST00000270061 MAP3K19Q56UN5 1328 aa33.25■■■□□ 2.91
SSBP4-201ENST00000270061 FBLN1P23142 703 aa33.25■■■□□ 2.91
SSBP4-201ENST00000270061 ANKRD24Q8TF21 1146 aa33.25■■■□□ 2.91
SSBP4-201ENST00000270061 CDCA7Q9BWT1 371 aaPredicted RBP33.25■■■□□ 2.91
SSBP4-201ENST00000270061 DEFB132Q7Z7B7 95 aa33.24■■■□□ 2.91
SSBP4-201ENST00000270061 DDB1Q16531 1140 aa33.23■■■□□ 2.91
SSBP4-201ENST00000270061 NLRP2Q9NX02 1062 aa33.23■■■□□ 2.91
SSBP4-201ENST00000270061 AMPHP49418 695 aa33.22■■■□□ 2.91
SSBP4-201ENST00000270061 FAM208AQ9UK61 1670 aaKnown RBP33.21■■■□□ 2.91
SSBP4-201ENST00000270061 TNS1Q9HBL0 1735 aaKnown RBP33.21■■■□□ 2.91
SSBP4-201ENST00000270061 HOXC9P31274 260 aa33.19■■■□□ 2.9
SSBP4-201ENST00000270061 CGNL1Q0VF96 1302 aa33.19■■■□□ 2.9
SSBP4-201ENST00000270061 PARD3Q8TEW0 1356 aa33.19■■■□□ 2.9
SSBP4-201ENST00000270061 DISP2A7MBM2 1401 aa33.19■■■□□ 2.9
SSBP4-201ENST00000270061 BAG6P46379 1132 aa33.19■■■□□ 2.9
SSBP4-201ENST00000270061 RRS1Q15050 365 aaKnown RBP33.19■■■□□ 2.9
SSBP4-201ENST00000270061 CCDC184Q52MB2 194 aa33.18■■■□□ 2.9
SSBP4-201ENST00000270061 RTL1A6NKG5 1358 aa33.17■■■□□ 2.9
SSBP4-201ENST00000270061 TRIM37O94972 964 aa33.16■■■□□ 2.9
SSBP4-201ENST00000270061 LTV1Q96GA3 475 aaPredicted RBP33.16■■■□□ 2.9
SSBP4-201ENST00000270061 MRS2Q9HD23 443 aa33.16■■■□□ 2.9
SSBP4-201ENST00000270061 OVOS2A0A0G2JMS6 1433 aa33.15■■■□□ 2.9
SSBP4-201ENST00000270061 PEAK1Q9H792 1746 aa33.15■■■□□ 2.9
SSBP4-201ENST00000270061 MYBBP1AQ9BQG0 1328 aaKnown RBP33.14■■■□□ 2.9
SSBP4-201ENST00000270061 RGPD2P0DJD1 1756 aa33.13■■■□□ 2.89
SSBP4-201ENST00000270061 KNSTRNQ9Y448 316 aa33.13■■■□□ 2.89
SSBP4-201ENST00000270061 SBF2Q86WG5 1849 aa33.13■■■□□ 2.89
SSBP4-201ENST00000270061 ANKRD26Q9UPS8 1709 aa33.12■■■□□ 2.89
SSBP4-201ENST00000270061 NPC1L1Q9UHC9 1359 aa33.12■■■□□ 2.89
SSBP4-201ENST00000270061 EXOC5O00471 708 aa33.12■■■□□ 2.89
SSBP4-201ENST00000270061 MAP2P11137 1827 aaKnown RBP33.12■■■□□ 2.89
SSBP4-201ENST00000270061 IL2RBP14784 551 aa33.1■■■□□ 2.89
SSBP4-201ENST00000270061 EN1Q05925 392 aaPredicted RBP33.09■■■□□ 2.89
SSBP4-201ENST00000270061 TNS2Q63HR2 1409 aa33.09■■■□□ 2.89
SSBP4-201ENST00000270061 AMER1Q5JTC6 1135 aaPredicted RBP33.08■■■□□ 2.89
SSBP4-201ENST00000270061 MARCH10Q8NA82 808 aaPredicted RBP33.08■■■□□ 2.89
SSBP4-201ENST00000270061 KIF24Q5T7B8 1368 aa33.08■■■□□ 2.89
SSBP4-201ENST00000270061 CNGB1Q14028 1251 aaPredicted RBP33.07■■■□□ 2.88
SSBP4-201ENST00000270061 FLT4P35916 1363 aa33.07■■■□□ 2.88
SSBP4-201ENST00000270061 APBA3O96018 575 aa33.06■■■□□ 2.88
SSBP4-201ENST00000270061 SMG6Q86US8 1419 aaKnown RBP33.05■■■□□ 2.88
SSBP4-201ENST00000270061 INSRP06213 1382 aa33.04■■■□□ 2.88
SSBP4-201ENST00000270061 CC2D1BQ5T0F9 858 aaKnown RBP33.04■■■□□ 2.88
SSBP4-201ENST00000270061 KAT6BQ8WYB5 2073 aa33.03■■■□□ 2.88
SSBP4-201ENST00000270061 SRCAPQ6ZRS2 3230 aa33.03■■■□□ 2.88
SSBP4-201ENST00000270061 HSP90AB2PQ58FF8 381 aa33.03■■■□□ 2.88
SSBP4-201ENST00000270061 EMILIN1Q9Y6C2 1016 aa33.03■■■□□ 2.88
SSBP4-201ENST00000270061 BCL9O00512 1426 aa33.02■■■□□ 2.88
SSBP4-201ENST00000270061 PPM1GO15355 546 aaPredicted RBP32.99■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms