RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 COL22A1Q8NFW1 1626 aaPredicted RBP36.83■■■■□ 3.49
SMARCD3-201ENST00000262188 NUTM2BA6NNL0 878 aaPredicted RBP36.81■■■■□ 3.48
SMARCD3-201ENST00000262188 NUTM2EB1AL46 878 aaPredicted RBP36.81■■■■□ 3.48
SMARCD3-201ENST00000262188 NUTM2AQ8IVF1 878 aaPredicted RBP36.81■■■■□ 3.48
SMARCD3-201ENST00000262188 FLT4P35916 1363 aa36.8■■■■□ 3.48
SMARCD3-201ENST00000262188 AXIN2Q9Y2T1 843 aa36.8■■■■□ 3.48
SMARCD3-201ENST00000262188 SHPRHQ149N8 1683 aa36.79■■■■□ 3.48
SMARCD3-201ENST00000262188 LTV1Q96GA3 475 aaPredicted RBP36.78■■■■□ 3.48
SMARCD3-201ENST00000262188 DIAPH1O60610 1272 aaKnown RBP36.77■■■■□ 3.48
SMARCD3-201ENST00000262188 IP6K1Q92551 441 aa36.77■■■■□ 3.48
SMARCD3-201ENST00000262188 JCADQ9P266 1359 aa36.76■■■■□ 3.48
SMARCD3-201ENST00000262188 EIF4A2Q14240 407 aaKnown RBP36.75■■■■□ 3.47
SMARCD3-201ENST00000262188 PRDM11Q9NQV5 511 aa36.75■■■■□ 3.47
SMARCD3-201ENST00000262188 INSRP06213 1382 aa36.75■■■■□ 3.47
SMARCD3-201ENST00000262188 ADAMTS2O95450 1211 aa36.75■■■■□ 3.47
SMARCD3-201ENST00000262188 RGPD5Q99666 1765 aa36.74■■■■□ 3.47
SMARCD3-201ENST00000262188 SENP3-EIF4A1A0A087X0R7 540 aa36.73■■■■□ 3.47
SMARCD3-201ENST00000262188 U2SURPO15042 1029 aaKnown RBP36.73■■■■□ 3.47
SMARCD3-201ENST00000262188 IL13P35225 146 aa36.73■■■■□ 3.47
SMARCD3-201ENST00000262188 ADAMTS8Q9UP79 889 aa36.73■■■■□ 3.47
SMARCD3-201ENST00000262188 CPDO75976 1380 aa36.73■■■■□ 3.47
SMARCD3-201ENST00000262188 RTL1A6NKG5 1358 aa36.72■■■■□ 3.47
SMARCD3-201ENST00000262188 WDR43Q15061 677 aaKnown RBP eCLIP36.71■■■■□ 3.47
SMARCD3-201ENST00000262188 FAM83GA6ND36 823 aa36.71■■■■□ 3.47
SMARCD3-201ENST00000262188 COL18A1P39060 1754 aa36.7■■■■□ 3.47
SMARCD3-201ENST00000262188 YTHDC1Q96MU7 727 aaKnown RBP36.69■■■■□ 3.46
SMARCD3-201ENST00000262188 KIF24Q5T7B8 1368 aa36.69■■■■□ 3.46
SMARCD3-201ENST00000262188 U2AF1L5P0DN76 240 aaPredicted RBP36.67■■■■□ 3.46
SMARCD3-201ENST00000262188 U2AF1Q01081 240 aaKnown RBP eCLIP36.67■■■■□ 3.46
SMARCD3-201ENST00000262188 ANKRD24Q8TF21 1146 aa36.64■■■■□ 3.46
SMARCD3-201ENST00000262188 NUDCQ9Y266 331 aa36.64■■■■□ 3.46
SMARCD3-201ENST00000262188 HMOX1P09601 288 aa36.63■■■■□ 3.45
SMARCD3-201ENST00000262188 CAMTA1Q9Y6Y1 1673 aa36.63■■■■□ 3.45
SMARCD3-201ENST00000262188 CCDC146Q8IYE0 955 aa36.62■■■■□ 3.45
SMARCD3-201ENST00000262188 FBXO41Q8TF61 875 aa36.62■■■■□ 3.45
SMARCD3-201ENST00000262188 LRP6O75581 1613 aa36.62■■■■□ 3.45
SMARCD3-201ENST00000262188 LMO7Q8WWI1 1683 aa36.61■■■■□ 3.45
SMARCD3-201ENST00000262188 USHBP1Q8N6Y0 703 aa36.6■■■■□ 3.45
SMARCD3-201ENST00000262188 BLMP54132 1417 aaPredicted RBP36.6■■■■□ 3.45
SMARCD3-201ENST00000262188 AEBP1Q8IUX7 1158 aa36.6■■■■□ 3.45
SMARCD3-201ENST00000262188 EYA1Q99502 592 aa36.6■■■■□ 3.45
SMARCD3-201ENST00000262188 RGPD2P0DJD1 1756 aa36.59■■■■□ 3.45
SMARCD3-201ENST00000262188 ERBB3P21860 1342 aa36.58■■■■□ 3.45
SMARCD3-201ENST00000262188 BTG4Q9NY30 223 aa36.57■■■■□ 3.44
SMARCD3-201ENST00000262188 NBPF6Q5VWK0 638 aa36.56■■■■□ 3.44
SMARCD3-201ENST00000262188 NBPF4Q96M43 638 aa36.56■■■■□ 3.44
SMARCD3-201ENST00000262188 SPATA31A6Q5VVP1 1343 aa36.56■■■■□ 3.44
SMARCD3-201ENST00000262188 STRN4Q9NRL3 753 aa36.55■■■■□ 3.44
SMARCD3-201ENST00000262188 RGPD1P0DJD0 1748 aa36.55■■■■□ 3.44
SMARCD3-201ENST00000262188 SULT6B1Q6IMI4 303 aa36.54■■■■□ 3.44
SMARCD3-201ENST00000262188 CSB-PGBD3P0DP91 1061 aa36.53■■■■□ 3.44
SMARCD3-201ENST00000262188 COL14A1Q05707 1796 aaKnown RBP36.53■■■■□ 3.44
SMARCD3-201ENST00000262188 COL5A2P05997 1499 aaPredicted RBP36.52■■■■□ 3.44
SMARCD3-201ENST00000262188 C8orf37Q96NL8 207 aa36.52■■■■□ 3.44
SMARCD3-201ENST00000262188 ABCC6O95255 1503 aa36.52■■■■□ 3.44
SMARCD3-201ENST00000262188 IGSF1Q8N6C5 1336 aa36.51■■■■□ 3.43
SMARCD3-201ENST00000262188 RSPH6AQ9H0K4 717 aa36.49■■■■□ 3.43
SMARCD3-201ENST00000262188 NLRP2Q9NX02 1062 aa36.49■■■■□ 3.43
SMARCD3-201ENST00000262188 PLCH1Q4KWH8 1693 aa36.49■■■■□ 3.43
SMARCD3-201ENST00000262188 PRKAR2BP31323 418 aa36.47■■■■□ 3.43
SMARCD3-201ENST00000262188 LARP1Q6PKG0 1096 aaKnown RBP36.47■■■■□ 3.43
SMARCD3-201ENST00000262188 EVA1CP58658 441 aa36.47■■■■□ 3.43
SMARCD3-201ENST00000262188 HNRNPUQ00839 825 aaKnown RBP eCLIP36.45■■■■□ 3.43
SMARCD3-201ENST00000262188 SALL2Q9Y467 1007 aaPredicted RBP36.45■■■■□ 3.43
SMARCD3-201ENST00000262188 NGLY1Q96IV0 654 aa36.44■■■■□ 3.42
SMARCD3-201ENST00000262188 PLEKHF1Q96S99 279 aa36.44■■■■□ 3.42
SMARCD3-201ENST00000262188 MEX3CQ5U5Q3 659 aaKnown RBP36.44■■■■□ 3.42
SMARCD3-201ENST00000262188 WDR17Q8IZU2 1322 aa36.43■■■■□ 3.42
SMARCD3-201ENST00000262188 FCHSD2O94868 740 aa36.42■■■■□ 3.42
SMARCD3-201ENST00000262188 TOM1L2Q6ZVM7 507 aa36.42■■■■□ 3.42
SMARCD3-201ENST00000262188 PHACTR3Q96KR7 559 aa36.42■■■■□ 3.42
SMARCD3-201ENST00000262188 APAF1O14727 1248 aa36.4■■■■□ 3.42
SMARCD3-201ENST00000262188 RUNDC1Q96C34 613 aa36.4■■■■□ 3.42
SMARCD3-201ENST00000262188 USP35Q9P2H5 1018 aa36.4■■■■□ 3.42
SMARCD3-201ENST00000262188 RRP7AQ9Y3A4 280 aaKnown RBP36.39■■■■□ 3.42
SMARCD3-201ENST00000262188 KDRP35968 1356 aa36.39■■■■□ 3.42
SMARCD3-201ENST00000262188 SLIT2O94813 1529 aa36.39■■■■□ 3.42
SMARCD3-201ENST00000262188 NRAPQ86VF7 1730 aa36.37■■■■□ 3.41
SMARCD3-201ENST00000262188 FAM208AQ9UK61 1670 aaKnown RBP36.36■■■■□ 3.41
SMARCD3-201ENST00000262188 TCP11L2Q8N4U5 519 aa36.35■■■■□ 3.41
SMARCD3-201ENST00000262188 NEUROD2Q15784 382 aa36.35■■■■□ 3.41
SMARCD3-201ENST00000262188 NCAPD2Q15021 1401 aa36.33■■■■□ 3.41
SMARCD3-201ENST00000262188 MAPK8IP3Q9UPT6 1336 aa36.33■■■■□ 3.41
SMARCD3-201ENST00000262188 BCL9LQ86UU0 1499 aa36.32■■■■□ 3.41
SMARCD3-201ENST00000262188 CRB1P82279 1406 aa36.31■■■■□ 3.4
SMARCD3-201ENST00000262188 NWD2Q9ULI1 1742 aa36.31■■■■□ 3.4
SMARCD3-201ENST00000262188 FNBP4Q8N3X1 1017 aaPredicted RBP36.3■■■■□ 3.4
SMARCD3-201ENST00000262188 CARD10Q9BWT7 1032 aa36.29■■■■□ 3.4
SMARCD3-201ENST00000262188 UNC5CLQ8IV45 518 aa36.29■■■■□ 3.4
SMARCD3-201ENST00000262188 AFF2P51816 1311 aa36.28■■■■□ 3.4
SMARCD3-201ENST00000262188 USP21Q9UK80 565 aa36.28■■■■□ 3.4
SMARCD3-201ENST00000262188 MEGF6O75095 1541 aa36.28■■■■□ 3.4
SMARCD3-201ENST00000262188 PNNQ9H307 717 aaKnown RBP36.27■■■■□ 3.4
SMARCD3-201ENST00000262188 CCDC9Q9Y3X0 531 aaKnown RBP36.27■■■■□ 3.4
SMARCD3-201ENST00000262188 TMPOP42166 694 aaKnown RBP36.24■■■■□ 3.39
SMARCD3-201ENST00000262188 MTHFSDQ2M296 383 aaKnown RBP36.24■■■■□ 3.39
SMARCD3-201ENST00000262188 NEFMP07197 916 aa36.24■■■■□ 3.39
SMARCD3-201ENST00000262188 RAPGEF4Q8WZA2 1011 aa36.23■■■■□ 3.39
SMARCD3-201ENST00000262188 SPATA31A1Q5TZJ5 1347 aa36.2■■■■□ 3.39
SMARCD3-201ENST00000262188 RIPK4P57078 832 aa36.19■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms