RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 CASKIN1Q8WXD9 1431 aa11.4□□□□□ -0.58
CXCR4-201ENST00000241393 PCF11O94913 1555 aaKnown RBP11.39□□□□□ -0.59
CXCR4-201ENST00000241393 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.39□□□□□ -0.59
CXCR4-201ENST00000241393 TLL1O43897 1013 aa11.39□□□□□ -0.59
CXCR4-201ENST00000241393 GGCXP38435 758 aa11.39□□□□□ -0.59
CXCR4-201ENST00000241393 EPS8L1Q8TE68 723 aa11.39□□□□□ -0.59
CXCR4-201ENST00000241393 GPSM3Q9Y4H4 160 aa11.39□□□□□ -0.59
CXCR4-201ENST00000241393 FMN1Q68DA7 1419 aa11.38□□□□□ -0.59
CXCR4-201ENST00000241393 KCNC4Q03721 635 aa11.38□□□□□ -0.59
CXCR4-201ENST00000241393 GLMNQ92990 594 aa11.38□□□□□ -0.59
CXCR4-201ENST00000241393 ZBBXA8MT70 800 aa11.37□□□□□ -0.59
CXCR4-201ENST00000241393 NR1H3Q13133 447 aa11.37□□□□□ -0.59
CXCR4-201ENST00000241393 SEMA3FQ13275 785 aa11.37□□□□□ -0.59
CXCR4-201ENST00000241393 CCDC24Q8N4L8 307 aa11.37□□□□□ -0.59
CXCR4-201ENST00000241393 MAP10Q9P2G4 905 aa11.37□□□□□ -0.59
CXCR4-201ENST00000241393 MCCD1P59942 119 aaPredicted RBP11.36□□□□□ -0.59
CXCR4-201ENST00000241393 PTK2Q05397 1052 aa11.36□□□□□ -0.59
CXCR4-201ENST00000241393 VAC14Q08AM6 782 aa11.36□□□□□ -0.59
CXCR4-201ENST00000241393 GAPVD1Q14C86 1478 aa11.35□□□□□ -0.59
CXCR4-201ENST00000241393 PDXDC2PQ6P474 469 aa11.35□□□□□ -0.59
CXCR4-201ENST00000241393 ZNF516Q92618 1163 aa11.35□□□□□ -0.59
CXCR4-201ENST00000241393 PRDM9Q9NQV7 894 aa11.35□□□□□ -0.59
CXCR4-201ENST00000241393 FHOD3Q2V2M9 1422 aa11.35□□□□□ -0.59
CXCR4-201ENST00000241393 SAMD9Q5K651 1589 aa11.34□□□□□ -0.59
CXCR4-201ENST00000241393 PHLDB1Q86UU1 1377 aa11.34□□□□□ -0.59
CXCR4-201ENST00000241393 HDGFL1Q5TGJ6 251 aa11.34□□□□□ -0.59
CXCR4-201ENST00000241393 THOC2Q8NI27 1593 aaKnown RBP11.34□□□□□ -0.59
CXCR4-201ENST00000241393 SETD5Q9C0A6 1442 aa11.33□□□□□ -0.6
CXCR4-201ENST00000241393 RAB3GAP2Q9H2M9 1393 aa11.33□□□□□ -0.6
CXCR4-201ENST00000241393 POM121CA8CG34 1229 aa11.33□□□□□ -0.6
CXCR4-201ENST00000241393 NEUROD1Q13562 356 aa11.33□□□□□ -0.6
CXCR4-201ENST00000241393 SNAPC4Q5SXM2 1469 aa11.32□□□□□ -0.6
CXCR4-201ENST00000241393 GPR37L1O60883 481 aa11.32□□□□□ -0.6
CXCR4-201ENST00000241393 ITGBL1O95965 494 aaPredicted RBP11.32□□□□□ -0.6
CXCR4-201ENST00000241393 SPNS2Q8IVW8 549 aa11.31□□□□□ -0.6
CXCR4-201ENST00000241393 TARBP1Q13395 1621 aaKnown RBP11.31□□□□□ -0.6
CXCR4-201ENST00000241393 KIF21AQ7Z4S6 1674 aa11.3□□□□□ -0.6
CXCR4-201ENST00000241393 S1PR4O95977 384 aa11.3□□□□□ -0.6
CXCR4-201ENST00000241393 UNC93B1Q9H1C4 597 aa11.3□□□□□ -0.6
CXCR4-201ENST00000241393 ZBTB24O43167 697 aaPredicted RBP11.3□□□□□ -0.6
CXCR4-201ENST00000241393 MAPKBP1O60336 1514 aa11.29□□□□□ -0.6
CXCR4-201ENST00000241393 ALG2Q9H553 416 aa11.29□□□□□ -0.6
CXCR4-201ENST00000241393 TDRD9Q8NDG6 1382 aaKnown RBP11.29□□□□□ -0.6
CXCR4-201ENST00000241393 PPP1R15AO75807 674 aaPredicted RBP11.28□□□□□ -0.6
CXCR4-201ENST00000241393 FBXO45P0C2W1 286 aa11.28□□□□□ -0.6
CXCR4-201ENST00000241393 ARHGAP9Q9BRR9 750 aa11.28□□□□□ -0.6
CXCR4-201ENST00000241393 FCF1Q9Y324 198 aaKnown RBP11.28□□□□□ -0.6
CXCR4-201ENST00000241393 ZBTB33Q86T24 672 aa11.27□□□□□ -0.6
CXCR4-201ENST00000241393 NKX2-3Q8TAU0 364 aa11.27□□□□□ -0.61
CXCR4-201ENST00000241393 GRIN2BQ13224 1484 aa11.26□□□□□ -0.61
CXCR4-201ENST00000241393 FGD6Q6ZV73 1430 aa11.26□□□□□ -0.61
CXCR4-201ENST00000241393 BPHLQ86WA6 291 aaPredicted RBP11.26□□□□□ -0.61
CXCR4-201ENST00000241393 PDE4CQ08493 712 aa11.25□□□□□ -0.61
CXCR4-201ENST00000241393 AGERQ15109 404 aa11.25□□□□□ -0.61
CXCR4-201ENST00000241393 ITGAEP38570 1179 aa11.24□□□□□ -0.61
CXCR4-201ENST00000241393 ANKLE1Q8NAG6 615 aa11.24□□□□□ -0.61
CXCR4-201ENST00000241393 EHBP1L1Q8N3D4 1523 aa11.24□□□□□ -0.61
CXCR4-201ENST00000241393 CCDC18Q5T9S5 1454 aa11.24□□□□□ -0.61
CXCR4-201ENST00000241393 MRC2Q9UBG0 1479 aa11.24□□□□□ -0.61
CXCR4-201ENST00000241393 FAM50AQ14320 339 aaKnown RBP11.24□□□□□ -0.61
CXCR4-201ENST00000241393 MTUS2Q5JR59 1369 aa11.23□□□□□ -0.61
CXCR4-201ENST00000241393 PCDHB9Q9Y5E1 797 aa11.23□□□□□ -0.61
CXCR4-201ENST00000241393 PBRM1Q86U86 1689 aa11.22□□□□□ -0.61
CXCR4-201ENST00000241393 NFATC2IPQ8NCF5 419 aa11.22□□□□□ -0.61
CXCR4-201ENST00000241393 PPP1R12CQ9BZL4 782 aa11.22□□□□□ -0.61
CXCR4-201ENST00000241393 ADAMTS12P58397 1594 aa11.21□□□□□ -0.61
CXCR4-201ENST00000241393 DZIP3Q86Y13 1208 aaKnown RBP11.21□□□□□ -0.61
CXCR4-201ENST00000241393 ADAMTS19Q8TE59 1207 aa11.21□□□□□ -0.61
CXCR4-201ENST00000241393 SUPT6HQ7KZ85 1726 aaKnown RBP11.21□□□□□ -0.62
CXCR4-201ENST00000241393 ARHGEF11O15085 1522 aa11.21□□□□□ -0.62
CXCR4-201ENST00000241393 SLFNL1Q499Z3 407 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 PTCRAQ6ISU1 281 aaPredicted RBP11.2□□□□□ -0.62
CXCR4-201ENST00000241393 SH3BP5LQ7L8J4 393 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 ZNF511Q8NB15 262 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 CDV3Q9UKY7 258 aaKnown RBP11.2□□□□□ -0.62
CXCR4-201ENST00000241393 MYOM3Q5VTT5 1437 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 ADAM32Q8TC27 787 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 BAP1Q92560 729 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 TRIM52Q96A61 297 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.2□□□□□ -0.62
CXCR4-201ENST00000241393 HFM1A2PYH4 1435 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 IQGAP2Q13576 1575 aa11.2□□□□□ -0.62
CXCR4-201ENST00000241393 NCOA2Q15596 1464 aa11.19□□□□□ -0.62
CXCR4-201ENST00000241393 CCDC125Q86Z20 511 aa11.19□□□□□ -0.62
CXCR4-201ENST00000241393 PBXIP1Q96AQ6 731 aa11.19□□□□□ -0.62
CXCR4-201ENST00000241393 HECW1Q76N89 1606 aa11.19□□□□□ -0.62
CXCR4-201ENST00000241393 IFT140Q96RY7 1462 aa11.19□□□□□ -0.62
CXCR4-201ENST00000241393 LRRIQ1Q96JM4 1722 aa11.18□□□□□ -0.62
CXCR4-201ENST00000241393 MAGEB6P1A0A0J9YX57 407 aa11.18□□□□□ -0.62
CXCR4-201ENST00000241393 RNF223E7ERA6 249 aa11.18□□□□□ -0.62
CXCR4-201ENST00000241393 RPIAP49247 311 aa11.18□□□□□ -0.62
CXCR4-201ENST00000241393 UGGT2Q9NYU1 1516 aa11.18□□□□□ -0.62
CXCR4-201ENST00000241393 PALM3A6NDB9 673 aaPredicted RBP11.17□□□□□ -0.62
CXCR4-201ENST00000241393 SLC10A4Q96EP9 437 aa11.17□□□□□ -0.62
CXCR4-201ENST00000241393 WDR62O43379 1518 aa11.17□□□□□ -0.62
CXCR4-201ENST00000241393 ATP9BO43861 1147 aa11.17□□□□□ -0.62
CXCR4-201ENST00000241393 CD2BP2O95400 341 aaKnown RBP11.17□□□□□ -0.62
CXCR4-201ENST00000241393 WNT7BP56706 349 aa11.17□□□□□ -0.62
CXCR4-201ENST00000241393 RNF20Q5VTR2 975 aa11.17□□□□□ -0.62
CXCR4-201ENST00000241393 CARD14Q9BXL6 1004 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms