RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 FAM98CQ17RN3 349 aaKnown RBP17.54■□□□□ 0.4
LSM5-201ENST00000223084 PANK3Q9H999 370 aa17.54■□□□□ 0.4
LSM5-201ENST00000223084 USP35Q9P2H5 1018 aa17.53■□□□□ 0.4
LSM5-201ENST00000223084 RGPD5Q99666 1765 aa17.53■□□□□ 0.4
LSM5-201ENST00000223084 SPATA31A1Q5TZJ5 1347 aa17.52■□□□□ 0.4
LSM5-201ENST00000223084 COL5A2P05997 1499 aaPredicted RBP17.52■□□□□ 0.4
LSM5-201ENST00000223084 SEPT12Q8IYM1 358 aa17.52■□□□□ 0.4
LSM5-201ENST00000223084 KIF20BQ96Q89 1820 aa17.51■□□□□ 0.39
LSM5-201ENST00000223084 A0A0G2JS52 829 aa17.51■□□□□ 0.39
LSM5-201ENST00000223084 MYT1Q01538 1121 aa17.51■□□□□ 0.39
LSM5-201ENST00000223084 LTN1O94822 1766 aa17.51■□□□□ 0.39
LSM5-201ENST00000223084 ONECUT3O60422 494 aaPredicted RBP17.5■□□□□ 0.39
LSM5-201ENST00000223084 BRWD3Q6RI45 1802 aa17.49■□□□□ 0.39
LSM5-201ENST00000223084 CGNL1Q0VF96 1302 aa17.48■□□□□ 0.39
LSM5-201ENST00000223084 MAP3K19Q56UN5 1328 aa17.47■□□□□ 0.39
LSM5-201ENST00000223084 CSB-PGBD3P0DP91 1061 aa17.47■□□□□ 0.39
LSM5-201ENST00000223084 RRS1Q15050 365 aaKnown RBP17.47■□□□□ 0.39
LSM5-201ENST00000223084 TOM1L2Q6ZVM7 507 aa17.47■□□□□ 0.39
LSM5-201ENST00000223084 CCDC7Q96M83 1385 aa17.47■□□□□ 0.39
LSM5-201ENST00000223084 WASHC2AQ641Q2 1341 aa17.47■□□□□ 0.39
LSM5-201ENST00000223084 WDR17Q8IZU2 1322 aa17.47■□□□□ 0.39
LSM5-201ENST00000223084 TCP11L2Q8N4U5 519 aa17.46■□□□□ 0.39
LSM5-201ENST00000223084 CRB1P82279 1406 aa17.46■□□□□ 0.39
LSM5-201ENST00000223084 IP6K1Q92551 441 aa17.45■□□□□ 0.38
LSM5-201ENST00000223084 UPF1Q92900 1129 aaKnown RBP eCLIP17.45■□□□□ 0.38
LSM5-201ENST00000223084 ABCC6O95255 1503 aa17.44■□□□□ 0.38
LSM5-201ENST00000223084 AMPHP49418 695 aa17.44■□□□□ 0.38
LSM5-201ENST00000223084 BARGINQ6ZT62 677 aa17.44■□□□□ 0.38
LSM5-201ENST00000223084 KRT27Q7Z3Y8 459 aa17.44■□□□□ 0.38
LSM5-201ENST00000223084 LTV1Q96GA3 475 aaPredicted RBP17.44■□□□□ 0.38
LSM5-201ENST00000223084 THSD7AQ9UPZ6 1657 aa17.43■□□□□ 0.38
LSM5-201ENST00000223084 HOXC9P31274 260 aa17.43■□□□□ 0.38
LSM5-201ENST00000223084 ANKRD24Q8TF21 1146 aa17.43■□□□□ 0.38
LSM5-201ENST00000223084 ADRA2BP18089 450 aa17.42■□□□□ 0.38
LSM5-201ENST00000223084 THRAP3Q9Y2W1 955 aaKnown RBP17.42■□□□□ 0.38
LSM5-201ENST00000223084 ERBB3P21860 1342 aa17.42■□□□□ 0.38
LSM5-201ENST00000223084 TNNT2P45379 298 aaPredicted RBP17.41■□□□□ 0.38
LSM5-201ENST00000223084 FAM182BQ5T319 152 aa17.41■□□□□ 0.38
LSM5-201ENST00000223084 CARD10Q9BWT7 1032 aa17.41■□□□□ 0.38
LSM5-201ENST00000223084 NLRP2Q9NX02 1062 aa17.41■□□□□ 0.38
LSM5-201ENST00000223084 KNSTRNQ9Y448 316 aa17.41■□□□□ 0.38
LSM5-201ENST00000223084 EMILIN1Q9Y6C2 1016 aa17.4■□□□□ 0.38
LSM5-201ENST00000223084 BLMP54132 1417 aaPredicted RBP17.39■□□□□ 0.38
LSM5-201ENST00000223084 MSH5O43196 834 aa17.39■□□□□ 0.37
LSM5-201ENST00000223084 PEAK1Q9H792 1746 aa17.38■□□□□ 0.37
LSM5-201ENST00000223084 ANKRD26Q9UPS8 1709 aa17.38■□□□□ 0.37
LSM5-201ENST00000223084 PIAS4Q8N2W9 510 aaPredicted RBP17.38■□□□□ 0.37
LSM5-201ENST00000223084 MAP2P11137 1827 aaKnown RBP17.37■□□□□ 0.37
LSM5-201ENST00000223084 PPM1GO15355 546 aaPredicted RBP17.37■□□□□ 0.37
LSM5-201ENST00000223084 PER1O15534 1290 aaPredicted RBP17.37■□□□□ 0.37
LSM5-201ENST00000223084 HSP90AB2PQ58FF8 381 aa17.37■□□□□ 0.37
LSM5-201ENST00000223084 AMER1Q5JTC6 1135 aaPredicted RBP17.37■□□□□ 0.37
LSM5-201ENST00000223084 RTL1A6NKG5 1358 aa17.37■□□□□ 0.37
LSM5-201ENST00000223084 MORC1Q86VD1 984 aa17.36■□□□□ 0.37
LSM5-201ENST00000223084 POLKQ9UBT6 870 aa17.36■□□□□ 0.37
LSM5-201ENST00000223084 NSD2O96028 1365 aa17.36■□□□□ 0.37
LSM5-201ENST00000223084 EP400Q96L91 3159 aa17.36■□□□□ 0.37
LSM5-201ENST00000223084 RGPD2P0DJD1 1756 aa17.35■□□□□ 0.37
LSM5-201ENST00000223084 WNK3Q9BYP7 1800 aa17.35■□□□□ 0.37
LSM5-201ENST00000223084 PDE3BQ13370 1112 aa17.35■□□□□ 0.37
LSM5-201ENST00000223084 CNGB1Q14028 1251 aaPredicted RBP17.35■□□□□ 0.37
LSM5-201ENST00000223084 FLT4P35916 1363 aa17.35■□□□□ 0.37
LSM5-201ENST00000223084 CC2D1BQ5T0F9 858 aaKnown RBP17.34■□□□□ 0.37
LSM5-201ENST00000223084 PARP4Q9UKK3 1724 aaKnown RBP17.34■□□□□ 0.37
LSM5-201ENST00000223084 SRCAPQ6ZRS2 3230 aa17.33■□□□□ 0.37
LSM5-201ENST00000223084 DISP2A7MBM2 1401 aa17.33■□□□□ 0.36
LSM5-201ENST00000223084 INSRP06213 1382 aa17.33■□□□□ 0.36
LSM5-201ENST00000223084 ZEB1P37275 1124 aaPredicted RBP17.33■□□□□ 0.36
LSM5-201ENST00000223084 DDB1Q16531 1140 aa17.33■□□□□ 0.36
LSM5-201ENST00000223084 NBPF6Q5VWK0 638 aa17.32■□□□□ 0.36
LSM5-201ENST00000223084 USHBP1Q8N6Y0 703 aa17.32■□□□□ 0.36
LSM5-201ENST00000223084 NBPF4Q96M43 638 aa17.32■□□□□ 0.36
LSM5-201ENST00000223084 CDCA7Q9BWT1 371 aaPredicted RBP17.32■□□□□ 0.36
LSM5-201ENST00000223084 LRRC37A3O60309 1634 aa17.32■□□□□ 0.36
LSM5-201ENST00000223084 KIF24Q5T7B8 1368 aa17.31■□□□□ 0.36
LSM5-201ENST00000223084 FAM208AQ9UK61 1670 aaKnown RBP17.3■□□□□ 0.36
LSM5-201ENST00000223084 IL2RBP14784 551 aa17.3■□□□□ 0.36
LSM5-201ENST00000223084 FAM196AQ6ZSG2 479 aa17.3■□□□□ 0.36
LSM5-201ENST00000223084 SMG6Q86US8 1419 aaKnown RBP17.3■□□□□ 0.36
LSM5-201ENST00000223084 EXOC5O00471 708 aa17.29■□□□□ 0.36
LSM5-201ENST00000223084 CCDC125Q86Z20 511 aa17.29■□□□□ 0.36
LSM5-201ENST00000223084 MARCH10Q8NA82 808 aaPredicted RBP17.29■□□□□ 0.36
LSM5-201ENST00000223084 TRIM37O94972 964 aa17.28■□□□□ 0.36
LSM5-201ENST00000223084 DEFB132Q7Z7B7 95 aa17.27■□□□□ 0.36
LSM5-201ENST00000223084 SF3B2Q13435 895 aaKnown RBP17.26■□□□□ 0.35
LSM5-201ENST00000223084 EIF4A2Q14240 407 aaKnown RBP17.26■□□□□ 0.35
LSM5-201ENST00000223084 TNS2Q63HR2 1409 aa17.26■□□□□ 0.35
LSM5-201ENST00000223084 EYA1Q99502 592 aa17.25■□□□□ 0.35
LSM5-201ENST00000223084 MEGF6O75095 1541 aa17.25■□□□□ 0.35
LSM5-201ENST00000223084 NPC1L1Q9UHC9 1359 aa17.25■□□□□ 0.35
LSM5-201ENST00000223084 OVOS2A0A0G2JMS6 1433 aa17.24■□□□□ 0.35
LSM5-201ENST00000223084 MTHFSP49914 203 aa17.23■□□□□ 0.35
LSM5-201ENST00000223084 KAT6BQ8WYB5 2073 aa17.22■□□□□ 0.35
LSM5-201ENST00000223084 DDX54Q8TDD1 881 aaKnown RBP17.22■□□□□ 0.35
LSM5-201ENST00000223084 RAPGEF4Q8WZA2 1011 aa17.22■□□□□ 0.35
LSM5-201ENST00000223084 RGPD1P0DJD0 1748 aa17.21■□□□□ 0.35
LSM5-201ENST00000223084 DDX10Q13206 875 aaKnown RBP17.21■□□□□ 0.35
LSM5-201ENST00000223084 PTF1AQ7RTS3 328 aa17.21■□□□□ 0.35
LSM5-201ENST00000223084 SBF2Q86WG5 1849 aa17.21■□□□□ 0.35
LSM5-201ENST00000223084 TNS1Q9HBL0 1735 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms