RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Gtf2a1Q99PM3 378 aa18.74■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Map3k13Q1HKZ5 959 aa18.74■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Klhdc4Q921I2 584 aa18.73■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Kif4P33174 1231 aa18.73■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Phf14Q9D4H9 881 aa18.73■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 SphkapQ6NSW3 1687 aa18.73■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 PhaxQ9JJT9 385 aaKnown RBP18.73■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Abca16E9PWJ7 1678 aa18.73■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Wwc1Q5SXA9 1104 aa18.73■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Btbd11Q6GQW0 1109 aa18.73■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Prkar2bP31324 416 aa18.72■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Rnf214Q8BFU3 668 aaKnown RBP18.72■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Zkscan1Q8BGS3 561 aaKnown RBP18.72■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Ppip5k2Q6ZQB6 1129 aa18.72■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Jakmip1Q8BVL9 626 aa18.72■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Edc4Q3UJB9 1406 aaKnown RBP18.72■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Speer4bQ9D9F7 267 aa18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Utp3Q9JI13 469 aaKnown RBP18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 AatkQ80YE4 1365 aa18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Mast1Q9R1L5 1570 aa18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Lrriq1Q0P5X1 1673 aa18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Polr3gQ6NXY9 223 aa18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Ccdc47Q9D024 483 aaKnown RBP18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Rrbp1Q99PL5 1605 aaKnown RBP18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Smg7Q5RJH6 1138 aaKnown RBP18.71■□□□□ 0.59
Ccdc88b-201ENSMUST00000113440 Hs1bp3Q3TC93 395 aa18.7■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Usp48Q3V0C5 1052 aa18.7■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Mad1l1Q9WTX8 717 aaKnown RBP18.7■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Kiaa1551Q5DTW7 1521 aa18.7■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Pprc1Q6NZN1 1644 aa18.7■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gli2Q0VGT2 1544 aa18.7■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Phlpp2Q8BXA7 1320 aa18.7■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Isy1Q69ZQ2 285 aaKnown RBP18.69■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gm21663A0A0G2JE01 267 aa18.69■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gm7361D3Z6R1 267 aa18.69■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 5031410I06RikE9Q4E0 267 aa18.69■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gm1979E9QAN3 267 aa18.69■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gm5862K7N5V5 267 aa18.69■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gm10220K7N660 267 aa18.69■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gm16486A0A1D5RMD1 1434 aa18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Ddx54Q8K4L0 874 aaKnown RBP18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Kcnh5Q920E3 988 aa18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Asxl2Q8BZ32 1370 aa18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Ints3Q7TPD0 1041 aaKnown RBP18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Sh3bgrQ9WUZ7 214 aa18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Znf518aB2RRF6 1478 aaKnown RBP18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Ankrd44B2RXR6 993 aa18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gnl3lQ6PGG6 577 aaKnown RBP18.68■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Gm21680A0A0G2JGR8 267 aa18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Map3k4O08648 1597 aa18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Pola1P33609 1465 aa18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 FosbP13346 338 aa18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Ptpdc1Q6NZK8 747 aa18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 SetQ9EQU5 289 aaKnown RBP18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Ppip5k1A2ARP1 1436 aa18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 GnpatP98192 678 aa18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Babam1Q3UI43 333 aa18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 AnlnQ8K298 1121 aaKnown RBP18.67■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Ccdc173A0JLY1 547 aa18.66■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Fam50bQ9WTJ8 334 aa18.66■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Fam208aQ69ZR9 1610 aaKnown RBP18.66■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Tpd52l1O54818 204 aa18.65■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Cchcr1Q8K2I2 770 aa18.65■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Talpid3E9PV87 1520 aa18.65■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Tbc1d9Q3UYK3 1264 aa18.65■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 PalldQ9ET54 1408 aa18.65■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Prrc2bQ7TPM1 1486 aaKnown RBP18.65■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 PaskQ8CEE6 1383 aa18.65■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 Taf3Q5HZG4 932 aa18.65■□□□□ 0.58
Ccdc88b-201ENSMUST00000113440 4930572O03RikQ8C5Y0 211 aa18.64■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Stard3nlQ9DCI3 235 aa18.64■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Ppp1r42Q8R1Z4 357 aa18.64■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Eif3aP23116 1344 aaKnown RBP18.64■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Plekhd1B2RPU2 505 aa18.64■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Tex14Q7M6U3 1450 aa18.64■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Bicd2Q921C5 820 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Kdm2bQ6P1G2 1309 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Fhod3Q76LL6 1578 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Cplx2P84086 134 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Ptch1Q61115 1434 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Wdr63B2RY71 923 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Nphp4P59240 1425 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Nol8Q3UHX0 1147 aaKnown RBP18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Tbc1d32Q3URV1 1296 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 IbspQ61711 324 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Mical1Q8VDP3 1048 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Naip7Q9JIB3 1402 aa18.63■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 CrcpO35427 148 aa18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Eif4g3Q80XI3 1579 aaKnown RBP18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 AU019823E9PUQ3 292 aa18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Lrrc7Q80TE7 1490 aa18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Tmem94Q7TSH8 1360 aa18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Cul7Q8VE73 1689 aa18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Tpm3P21107 285 aaKnown RBP18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Kif3aP28741 701 aa18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Psma5Q9Z2U1 241 aaKnown RBP18.62■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Bcar3Q9QZK2 820 aa18.6■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Rlbp1Q9Z275 317 aa18.6■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Frmpd2A0A140LI67 1392 aa18.6■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Terf2O35144 541 aa18.6■□□□□ 0.57
Retrieved 100 of 22,080 RNA–protein pairs in 76.5 ms