RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TGM2P21980 687 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 MIPP30301 263 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 PCK1P35558 622 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 ACTN2P35609 894 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 HNRNPKP61978 463 aaKnown RBP eCLIP12.65□□□□□ -0.38
UPF1-203ENST00000594504 C1orf61Q13536 156 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 CDKN3Q16667 212 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 MYLK3Q32MK0 819 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 TBC1D25Q3MII6 688 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 ZNF805Q5CZA5 627 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 TTC7BQ86TV6 843 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 DCP2Q8IU60 420 aaKnown RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 TMTC1Q8IUR5 882 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 PSTKQ8IV42 348 aaKnown RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 RBFAQ8N0V3 343 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 ZNF548Q8NEK5 533 aaPredicted RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 OR2AP1Q8NGE2 309 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 ZNF564Q8TBZ8 553 aaPredicted RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 IFI44Q8TCB0 444 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 LMX1AQ8TE12 382 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 ISG20Q96AZ6 181 aaKnown RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 TBC1D31Q96DN5 1066 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 IFT43Q96FT9 208 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 FCRL3Q96P31 734 aaPredicted RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 UBL7Q96S82 380 aaPredicted RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 EIF3CQ99613 913 aaKnown RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 ABCG4Q9H172 646 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 MBNL1Q9NR56 388 aaKnown RBP12.65□□□□□ -0.38
UPF1-203ENST00000594504 INTUQ9ULD6 942 aa12.65□□□□□ -0.38
UPF1-203ENST00000594504 FREM2Q5SZK8 3169 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 APC2O95996 2303 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 INSIG1O15503 277 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 TSPAN6O43657 245 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 BUB1O43683 1085 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 KDELR3O43731 214 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 CSO75390 466 aaKnown RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 LCA5LO95447 670 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 POP4O95707 220 aaKnown RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 NME1P15531 152 aaKnown RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 JUNDP17535 347 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 HTR7P34969 479 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 CYLC1P35663 651 aaPredicted RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 RABIFP47224 123 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 MAPKAPK2P49137 400 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 PFN3P60673 137 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 SNRPD1P62314 119 aaKnown RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 GABREP78334 506 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 POLD3Q15054 466 aaPredicted RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 ERMARDQ5T6L9 678 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 GUSBP11Q6P575 273 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 NYAP1Q6ZVC0 841 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 PARGQ86W56 976 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 ZNF354CQ86Y25 554 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 SPACA3Q8IXA5 215 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 RHOT2Q8IXI1 618 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 PLPP6Q8IY26 295 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 FAM181AQ8N9Y4 354 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 SPC24Q8NBT2 197 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 FAM174AQ8TBP5 190 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 MAPK15Q8TD08 544 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 SLC39A7Q92504 469 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 CENPTQ96BT3 561 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 LENG8Q96PV6 779 aaPredicted RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 PEBP4Q96S96 227 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 EPAS1Q99814 870 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 MAGEH1Q9H213 219 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 NOL6Q9H6R4 1146 aaKnown RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 LUC7LQ9NQ29 371 aaKnown RBP12.64□□□□□ -0.39
UPF1-203ENST00000594504 PCSK1NQ9UHG2 260 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 HPCAL4Q9UM19 191 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 AP4E1Q9UPM8 1137 aa12.64□□□□□ -0.39
UPF1-203ENST00000594504 COL27A1Q8IZC6 1860 aaPredicted RBP12.63□□□□□ -0.39
UPF1-203ENST00000594504 LAMA5O15230 3695 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 CELSR3Q9NYQ7 3312 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 A0A1W2PNU3 283 aaPredicted RBP12.63□□□□□ -0.39
UPF1-203ENST00000594504 H3BM21 787 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 AQP9O43315 295 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 RAMP2O60895 175 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 GCATO75600 419 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 C1QL1O75973 258 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 GSRP00390 522 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 TIMP2P16035 220 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 IGFALSP35858 605 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 ETFBP38117 255 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 DUSP3P51452 185 aaPredicted RBP12.63□□□□□ -0.39
UPF1-203ENST00000594504 CXADRP78310 365 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 TLE3Q04726 772 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 SPA17Q15506 151 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 BOLA3Q53S33 107 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 PERM1Q5SV97 790 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 GDPD4Q6W3E5 623 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 CYP4V2Q6ZWL3 525 aaPredicted RBP12.63□□□□□ -0.39
UPF1-203ENST00000594504 EFL1Q7Z2Z2 1120 aaKnown RBP12.63□□□□□ -0.39
UPF1-203ENST00000594504 BTBD6Q96KE9 485 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 DEPDC7Q96QD5 511 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 LGMNQ99538 433 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 SNRNP25Q9BV90 132 aaKnown RBP12.63□□□□□ -0.39
UPF1-203ENST00000594504 DUSP23Q9BVJ7 150 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 COQ6Q9Y2Z9 468 aa12.63□□□□□ -0.39
UPF1-203ENST00000594504 ACACAQ13085 2346 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms