RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 GOLGA6AQ9NYA3 693 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 SHOC2Q9UQ13 582 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 LOC285095A0A1B0GVY8 99 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 TCRBV21S2A2A0A5A6 115 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 KPNA3O00505 521 aaPredicted RBP16.72■□□□□ 0.27
VPS4A-202ENST00000562754 PI15O43692 258 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 NDST3O95803 873 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 IL1BP01584 269 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 C7P10643 843 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 GALNT3Q14435 633 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 NAA30Q147X3 362 aaPredicted RBP16.72■□□□□ 0.27
VPS4A-202ENST00000562754 MORF4L2Q15014 288 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 CST6Q15828 149 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 ERCC6LQ2NKX8 1250 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 ARMC12Q5T9G4 340 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 ZNF776Q68DI1 518 aaPredicted RBP16.72■□□□□ 0.27
VPS4A-202ENST00000562754 DENND5AQ6IQ26 1287 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 RANBP10Q6VN20 620 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 PARS2Q7L3T8 475 aaKnown RBP16.72■□□□□ 0.27
VPS4A-202ENST00000562754 DSG4Q86SJ6 1040 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 HOOK3Q86VS8 718 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 LPCAT1Q8NF37 534 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 PDCD6IPQ8WUM4 868 aaKnown RBP16.72■□□□□ 0.27
VPS4A-202ENST00000562754 UBXN4Q92575 508 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 SMIM14Q96QK8 99 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 NEUROG2Q9H2A3 272 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 ANAPC5Q9UJX4 755 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 PCDHB9Q9Y5E1 797 aa16.72■□□□□ 0.27
VPS4A-202ENST00000562754 C1QTNF3-AMACRE9PGA6 284 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 GOLGA8MH3BSY2 632 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 PLK4O00444 970 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 MID1O15344 667 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 ATG13O75143 517 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 CPP00450 1065 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 EPOP01588 193 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 AOC1P19801 751 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 ITIH2P19823 946 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 CA4P22748 312 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 ITGB7P26010 798 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 ECHS1P30084 290 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 TUBB4BP68371 445 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 CDK16Q00536 496 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 MTAPQ13126 283 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 CALCOCO2Q13137 446 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 SLC1A5Q15758 541 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 QPCTQ16769 361 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 ZNF805Q5CZA5 627 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 SIRPB2Q5JXA9 342 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 NAPEPLDQ6IQ20 393 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 PCGF5Q86SE9 256 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 SPEM1Q8N4L4 309 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 SLC25A41Q8N5S1 370 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 BBOF1Q8ND07 529 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 MCUQ8NE86 351 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 OR52K1Q8NGK4 314 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 FBXO25Q8TCJ0 367 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 PIH1D2Q8WWB5 315 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 SPOCK2Q92563 424 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 ART4Q93070 314 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 IFT43Q96FT9 208 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 CASS4Q9NQ75 786 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 FAM114A2Q9NRY5 505 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 ZDHHC18Q9NUE0 388 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 PIH1D1Q9NWS0 290 aaKnown RBP16.71■□□□□ 0.27
VPS4A-202ENST00000562754 DKK3Q9UBP4 350 aa16.71■□□□□ 0.27
VPS4A-202ENST00000562754 C16orf96A6NNT2 1141 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 RNASEH1O60930 286 aaKnown RBP16.7■□□□□ 0.26
VPS4A-202ENST00000562754 ADH1BP00325 375 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 PRKCGP05129 697 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 GABRG2P18507 467 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 NDUFV2P19404 249 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 HLA-DPA1P20036 260 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 DRD3P35462 400 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 CARSP49589 748 aaKnown RBP16.7■□□□□ 0.26
VPS4A-202ENST00000562754 DGKEP52429 567 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 PLTPP55058 493 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 PTPRRQ15256 657 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 LRRC73Q5JTD7 316 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 PPP1R21Q6ZMI0 780 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 CAND1Q86VP6 1230 aaKnown RBP16.7■□□□□ 0.26
VPS4A-202ENST00000562754 TMPRSS6Q8IU80 811 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 AADATQ8N5Z0 425 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 MRGPRX1Q96LB2 322 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 PWWP2AQ96N64 755 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 SERPINB12Q96P63 405 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 HHIPQ96QV1 700 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 PABPC3Q9H361 631 aaKnown RBP16.7■□□□□ 0.26
VPS4A-202ENST00000562754 ARNT2Q9HBZ2 717 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 ARIH1Q9Y4X5 557 aaPredicted RBP16.7■□□□□ 0.26
VPS4A-202ENST00000562754 ZDBF2Q9HCK1 2354 aa16.7■□□□□ 0.26
VPS4A-202ENST00000562754 VCANP13611 3396 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 UPK3BL1B0FP48 263 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 UPK3BL2E5RIL1 263 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 SPINT1O43278 529 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 FGF1P05230 155 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 TIMP2P16035 220 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 SLC8A1P32418 973 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 ABL2P42684 1182 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 MAGEA3P43357 314 aa16.69■□□□□ 0.26
VPS4A-202ENST00000562754 MAGEA9P43362 315 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms