RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 NIPA2Q8N8Q9 360 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 TERB1Q8NA31 727 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 ABHD11Q8NFV4 315 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 ACTL9Q8TC94 416 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 AGR3Q8TD06 166 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 HEXIM2Q96MH2 286 aaKnown RBP13.41□□□□□ -0.26
CLK3-206ENST00000562078 SLC7A5P2Q9GIP4 190 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 PCDHAC1Q9H158 963 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 ADAMTS10Q9H324 1103 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 NOL6Q9H6R4 1146 aaKnown RBP13.41□□□□□ -0.26
CLK3-206ENST00000562078 WDR41Q9HAD4 459 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 HACD3Q9P035 362 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 HES2Q9Y543 173 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 DGKBQ9Y6T7 804 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 NRCAMQ92823 1304 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 MYADML2A6NDP7 307 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 ZNF839A8K0R7 811 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 CLDN25C9JDP6 229 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 AURKAO14965 403 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 TSHRP16473 764 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 TTKP33981 857 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 ACADSBP45954 432 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 YAP1P46937 504 aaKnown RBP13.41□□□□□ -0.26
CLK3-206ENST00000562078 RAD23AP54725 363 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 RBP5P82980 135 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 DCAF4L1Q3SXM0 396 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 PIWIL3Q7Z3Z3 882 aaKnown RBP13.41□□□□□ -0.26
CLK3-206ENST00000562078 MAPK15Q8TD08 544 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 RSAD2Q8WXG1 361 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 OR52B2Q96RD2 323 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 MKS1Q9NXB0 559 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 SNTG2Q9NY99 539 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 EMCNQ9ULC0 261 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 HTTP42858 3142 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 THSD7BQ9C0I4 1608 aa13.41□□□□□ -0.26
CLK3-206ENST00000562078 ZSCAN5BA6NJL1 495 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 GOLGA8CPA6NN73 597 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 PPEF2O14830 753 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 FYNP06241 537 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 PRKCAP17252 672 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 CCND3P30281 292 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 HOXA11P31270 313 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 ARL1P40616 181 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 IST1P53990 364 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 CLCQ05315 142 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 INCA1Q0VD86 236 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 CCSAPQ6IQ19 270 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 TMC5Q6UXY8 1006 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 RALGPS2Q86X27 583 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 C10orf107Q8IVU9 208 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 FAM71DQ8N9W8 422 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 TNIP2Q8NFZ5 429 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 UBA3Q8TBC4 463 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 SLCO4A1Q96BD0 722 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 CSF3RQ99062 836 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 MUC3BQ9H195 1237 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 RNF19AQ9NV58 838 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 TXNDC16Q9P2K2 825 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 CRNNQ9UBG3 495 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 TRIM64A6NGJ6 449 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 HOXC11O43248 304 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 GPR32O75388 356 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 LRCH4O75427 683 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 PARNO95453 639 aaKnown RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 MX2P20592 715 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 CYP3A5P20815 502 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 POLR2IP36954 125 aaKnown RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 PTPN9P43378 593 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 GJA9P57773 515 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 ATP6V0D1P61421 351 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 PURAQ00577 322 aaKnown RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 SLC25A11Q02978 314 aaKnown RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 BFSP2Q13515 415 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 ZNF846Q147U1 533 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 MAPRE1Q15691 268 aaKnown RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 TFDP3Q5H9I0 405 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 GLRA4Q5JXX5 417 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 N4BP2L1Q5TBK1 243 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 LGSNQ5TDP6 509 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 SLC27A1Q6PCB7 646 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 CHSY3Q70JA7 882 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 AKAP14Q86UN6 197 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 HERC6Q8IVU3 1022 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 ARFGAP1Q8N6T3 406 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 BPIFB6Q8NFQ5 453 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 PGBD4Q96DM1 585 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 TMA16Q96EY4 203 aaKnown RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 MARK4Q96L34 752 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 IL12RB2Q99665 862 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 ZBED2Q9BTP6 218 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 PLAC1Q9HBJ0 212 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 XPNPEP3Q9NQH7 507 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 C20orf96Q9NUD7 363 aaPredicted RBP13.4□□□□□ -0.26
CLK3-206ENST00000562078 VPS28Q9UK41 221 aa13.4□□□□□ -0.26
CLK3-206ENST00000562078 DLGAP1O14490 977 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 FKTNO75072 461 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 HMGCRP04035 888 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 SERPINE1P05121 402 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 VDRP11473 427 aa13.39□□□□□ -0.27
CLK3-206ENST00000562078 IL1R2P27930 398 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms