RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	NDRG2	Q9UN36	371 aa	Known RBP	9.63	□□□□□ -0.87
YBX3-215	ENST00000544504	ERVW-1	Q9UQF0	538 aa		9.63	□□□□□ -0.87
YBX3-215	ENST00000544504	INSIG1	O15503	277 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	KAT7	O95251	611 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	KCNK5	O95279	499 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	SRC	P12931	536 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	GLDC	P23378	1020 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	CD68	P34810	354 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	KDSR	Q06136	332 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	LAMB3	Q13751	1172 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	CYTH1	Q15438	398 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	GEN1	Q17RS7	908 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	ACCSL	Q4AC99	568 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	SPDYC	Q5MJ68	293 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	C22orf39	Q6P5X5	142 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	ZDHHC24	Q6UX98	284 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	LINGO4	Q6UY18	593 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	TRMT11	Q7Z4G4	463 aa	Known RBP	9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	SRL	Q86TD4	932 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	PRUNE1	Q86TP1	453 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	LONP2	Q86WA8	852 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	CCNJL	Q8IV13	435 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	FAM160A2	Q8N612	972 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	PDCD7	Q8N8D1	485 aa	Known RBP	9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	TSEN2	Q8NCE0	465 aa	Known RBP	9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	OR2AP1	Q8NGE2	309 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	PRCC	Q92733	491 aa	Predicted RBP	9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	CAVIN3	Q969G5	261 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	IFT43	Q96FT9	208 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	LRIG1	Q96JA1	1093 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	FEM1C	Q96JP0	617 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	TUBGCP5	Q96RT8	1024 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	SRPK1	Q96SB4	655 aa	Known RBP	9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	NAT9	Q9BTE0	207 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	LMAN1L	Q9HAT1	526 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	LHX3	Q9UBR4	397 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	SUN2	Q9UH99	717 aa		9.62	□□□□□ -0.87
YBX3-215	ENST00000544504	ASH1L	Q9NR48	2969 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	MYOF	Q9NZM1	2061 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	MAGEB16	A2A368	324 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	OTOL1	A6NHN0	477 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	CHURC1-FNTB	B4DL54	471 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	SPECC1L-ADORA2A	F8WAN1	911 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	SOCS5	O75159	536 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	PAPSS2	O95340	614 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	POP4	O95707	220 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	CD160	O95971	181 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	ZNF806	P0C7X5	589 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	H2AFX	P16104	143 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	CR2	P20023	1033 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	HLA-DPA1	P20036	260 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	DRD1	P21728	446 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	NFKBIA	P25963	317 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	CTH	P32929	405 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	CD86	P42081	329 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	SLC6A11	P48066	632 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	NPY2R	P49146	381 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	FNTB	P49356	437 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	SCNN1B	P51168	640 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	WNT3A	P56704	352 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	RPL26	P61254	145 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	SATB1	Q01826	763 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	GRSF1	Q12849	480 aa	Known RBP eCLIP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	CDH17	Q12864	832 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	SRSF5	Q13243	272 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	NAA30	Q147X3	362 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	DLG2	Q15700	870 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	FBXO43	Q4G163	708 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	FNDC3B	Q53EP0	1204 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	CARD16	Q5EG05	197 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	FAXC	Q5TGI0	409 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	STPG1	Q5TH74	334 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	KCTD11	Q693B1	232 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	LRRC8B	Q6P9F7	803 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	LEKR1	Q6ZMV7	388 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	CEP68	Q76N32	757 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	TRMT10C	Q7L0Y3	403 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	DSG4	Q86SJ6	1040 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	C12orf40	Q86WS4	652 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	RELL1	Q8IUW5	271 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	NDUFAF2	Q8N183	169 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	PHTF2	Q8N3S3	785 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	SPEM1	Q8N4L4	309 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	TAB3	Q8N5C8	712 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	DNAAF3	Q8N9W5	541 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	ARRDC2	Q8TBH0	407 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	AEN	Q8WTP8	325 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	FAM3C	Q92520	227 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	TADA1	Q96BN2	335 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	OXNAD1	Q96HP4	312 aa	Predicted RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	PKNOX2	Q96KN3	472 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	TTC25	Q96NG3	672 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	RBM15	Q96T37	977 aa	Known RBP eCLIP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	TBL1Y	Q9BQ87	522 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	ADGRE3	Q9BY15	652 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	ATP13A3	Q9H7F0	1226 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	ARNT2	Q9HBZ2	717 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	BFAR	Q9NZS9	450 aa		9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	RPL26L1	Q9UNX3	145 aa	Known RBP	9.61	□□□□□ -0.87
YBX3-215	ENST00000544504	FCF1	Q9Y324	198 aa	Known RBP	9.61	□□□□□ -0.87

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