RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 HPS4Q9NQG7 708 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 LRRC4BQ9NT99 713 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 THUMPD1Q9NXG2 353 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RABL2AQ9UBK7 228 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RABL2BQ9UNT1 228 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PCDHB1Q9Y5F3 818 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 LTN1O94822 1766 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 OR6C75A6NL08 312 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RHPN2P1A8MT19 583 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PER2O15055 1255 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBX4P57082 545 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 DRICH1Q6PGQ1 229 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 OTOAQ7RTW8 1153 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 CAND1Q86VP6 1230 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 CREG2Q8IUH2 290 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 BTBD9Q96Q07 612 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TRPS1Q9UHF7 1281 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3DA0A087WVF3 549 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3IA0A087WXS9 549 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3EA0A087X179 549 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3KA0A087X1G2 549 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3FA6NER0 549 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3LB9A6J9 549 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 SUPT7LO94864 414 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ATG7O95352 703 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3HP0C7X1 549 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 COX4I1P13073 169 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 EPHB2P29323 1055 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 AKT2P31751 481 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 FAUP35544 74 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 SERPINH1P50454 418 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RAB2AP61019 212 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 LMAN2Q12907 356 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 METTL21CQ5VZV1 264 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3GQ6DHY5 549 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3CQ6IPX1 549 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 FBXL19Q6PCT2 694 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 MARK2Q7KZI7 788 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D3Q8IZP1 549 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ETNPPLQ8TBG4 499 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TM9SF4Q92544 642 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 EPB41L4BQ9H329 900 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 MRTO4Q9UKD2 239 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 SAMD4AQ9UPU9 718 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 LZTS1Q9Y250 596 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 A0A1W2PPC1 479 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 SNRPB2P08579 225 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RHOAP61586 193 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ROR2Q01974 943 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RFTN2Q52LD8 501 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 MARC1Q5VT66 337 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PEG10Q86TG7 708 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 FAM71AQ8IYT1 594 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 KIAA0895Q8NCT3 520 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 UBA3Q8TBC4 463 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PIGKQ92643 395 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PROX1Q92786 737 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 BBS2Q9BXC9 721 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PORCNQ9H237 461 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 CD248Q9HCU0 757 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PNPLA8Q9NP80 782 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 CNGB3Q9NQW8 809 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 WBP1LQ9NX94 342 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 RAPGEFL1Q9UHV5 662 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 C3orf18Q9UK00 162 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ERVW-1Q9UQF0 538 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 A0A0B4J269 797 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TSPAN19P0C672 248 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PSMD4P55036 377 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ZNF280AP59817 542 aaPredicted RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 VBP1P61758 197 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 MC1RQ01726 317 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 LGALS3BPQ08380 585 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 SPANXN2Q5MJ10 180 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ARMC4Q5T2S8 1044 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 DUPD1Q68J44 220 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 IL27RAQ6UWB1 636 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 TBC1D21Q8IYX1 336 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 DEFB107AQ8IZN7 70 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 FBXW8Q8N3Y1 598 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 CCDC185Q8N715 623 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PACRGLQ8N7B6 248 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 WDR36Q8NI36 951 aaKnown RBP7.87□□□□□ -1.15
VPS13D-211ENST00000543710 SEMA4AQ9H3S1 761 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 C3orf14Q9HBI5 128 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 DDIT4Q9NX09 232 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 IGSF9Q9P2J2 1179 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 MCM8Q9UJA3 840 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 ING4Q9UNL4 249 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 CAPN6Q9Y6Q1 641 aa7.87□□□□□ -1.15
VPS13D-211ENST00000543710 PEX1O43933 1283 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 TCEA3O75764 348 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CASP7P55210 303 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 TAS2R50P59544 299 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 SULT2A1Q06520 285 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 DUSP28Q4G0W2 176 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CYP20A1Q6UW02 462 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 UBALD2Q8IYN6 164 aa7.86□□□□□ -1.15
VPS13D-211ENST00000543710 CARNMT1Q8N4J0 409 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms