RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 MTF2Q9Y483 593 aaPredicted RBP12.94□□□□□ -0.34
SFSWAP-209ENST00000540469 SOBPA7XYQ1 873 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 YDJCA8MPS7 323 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CLDN25C9JDP6 229 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 STAG3L1P0CL83 205 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 NCAM1P13591 858 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 NAT1P18440 290 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 S100A1P23297 94 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 YWHAQP27348 245 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 NMBRP28336 390 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 GABRB3P28472 473 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 KPNA2P52292 529 aaKnown RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 STXBP2Q15833 593 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 FUT11Q495W5 492 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 BROXQ5VW32 411 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 SNX29P2Q8IUI4 249 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CLEC4FQ8N1N0 589 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 SFRP1Q8N474 314 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 MFSD2AQ8NA29 543 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 C2orf40Q9H1Z8 148 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CDT1Q9H211 546 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 RHOJQ9H4E5 214 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 PIF1Q9H611 641 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 TMPRSS4Q9NRS4 437 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CCM2LQ9NUG4 571 aaPredicted RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 MRGBPQ9NV56 204 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 PSME2Q9UL46 239 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 GIT1Q9Y2X7 761 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 MAFBQ9Y5Q3 323 aaPredicted RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 TLL2Q9Y6L7 1015 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 SLC30A1Q9Y6M5 507 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 SNAP29O95721 258 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 ELK4P28324 431 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 MAGEA12P43365 314 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 DNASE1L3Q13609 305 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 FRG1Q14331 258 aaKnown RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CARTPTQ16568 116 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 AMHR2Q16671 573 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 SLC36A3Q495N2 470 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 INTS11Q5TA45 600 aaKnown RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 IER5Q5VY09 327 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 TP53INP2Q8IXH6 220 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 SPPL2BQ8TCT7 592 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 RNF139Q8WU17 664 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 STARD8Q92502 1023 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 DNAI2Q9GZS0 605 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 FBRSL1Q9HCM7 1045 aaKnown RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CD320Q9NPF0 282 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 ZCWPW2A0A1B0GU75 182 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 KLRG2A4D1S0 409 aaPredicted RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 DYNC1LI2O43237 492 aaPredicted RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 AQP9O43315 295 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 HADHAP40939 763 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 OPRL1P41146 370 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 MPP1Q00013 466 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 MXD4Q14582 209 aaPredicted RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 ZNF846Q147U1 533 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 TMEM132DQ14C87 1099 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 POLD3Q15054 466 aaPredicted RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CCNYL2Q5T2Q4 361 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CLEC6AQ6EIG7 209 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 DCLRE1AQ6PJP8 1040 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 EPHX4Q8IUS5 362 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 GABPB2Q8TAK5 448 aaPredicted RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 RAB2BQ8WUD1 216 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 HDAC11Q96DB2 347 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 CPB2Q96IY4 423 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 FAR2Q96K12 515 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 RPL10LQ96L21 214 aaKnown RBP12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 PCDH12Q9NPG4 1184 aa12.93□□□□□ -0.34
SFSWAP-209ENST00000540469 FAM95CA0A1B0GW59 222 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 A6NL46 340 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 SPATA31C2B4DYI2 1134 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 EEF2KO00418 725 aaKnown RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 S100BP04271 92 aaPredicted RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 ALDH2P05091 517 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 SLC35E2BP0CK96 405 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 MTHFD1P11586 935 aaKnown RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 TPTEP56180 551 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 CUZD1Q86UP6 607 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 FAM35AQ86V20 835 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 ZC3HC1Q86WB0 502 aaKnown RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 CMTR2Q8IYT2 770 aaKnown RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 TXNDC5Q8NBS9 432 aaKnown RBP12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 USP33Q8TEY7 942 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 TANKQ92844 425 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 CENPOQ9BU64 300 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 SMARCAD1Q9H4L7 1026 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 ARMC1Q9NVT9 282 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 TRIP11Q15643 1979 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 SUPT7LO94864 414 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 LDLRP01130 860 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 C1QTNF8P60827 252 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 RAB10P61026 200 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 UGP2Q16851 508 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 VPS26BQ4G0F5 336 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 DENND6AQ8IWF6 608 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 AKT1S1Q96B36 256 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 SNX27Q96L92 541 aa12.92□□□□□ -0.34
SFSWAP-209ENST00000540469 GPR22Q99680 433 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms