RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 ZSCAN30Q86W11 494 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 TMPRSS12Q86WS5 348 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 DCP2Q8IU60 420 aaKnown RBP10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 TP53I13Q8NBR0 393 aaPredicted RBP10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 DENND6BQ8NEG7 585 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 OR4C6Q8NH72 309 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 FAM174AQ8TBP5 190 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 HCAR2Q8TDS4 363 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 CXorf40AQ8TE69 158 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 HSPH1Q92598 858 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 CSPG4P5Q96PW8 444 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 NUP85Q9BW27 656 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 CCDC86Q9H6F5 360 aaKnown RBP10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 PCDH18Q9HCL0 1135 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 PCDH12Q9NPG4 1184 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 IPO11Q9UI26 975 aaKnown RBP10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 COQ6Q9Y2Z9 468 aa10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 LUC7L2Q9Y383 392 aaKnown RBP10.54□□□□□ -0.72
PRPF40B-204ENST00000527253 DSPP15924 2871 aaKnown RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 GOLGA6L19H0YKK7 550 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 K7ESM1 405 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 RIOK3O14730 519 aaKnown RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 SCAMP1O15126 338 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 PALMO75781 387 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 TM7SF2O76062 418 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 NME1P15531 152 aaKnown RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 HNRNPH3P31942 346 aaKnown RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 EIF4A3P38919 411 aaKnown RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 ARSEP51690 589 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 INSM1Q01101 510 aaPredicted RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 IL10RBQ08334 325 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 SLC10A7Q0GE19 358 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 TARDBPQ13148 414 aaKnown RBP eCLIP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 PIGHQ14442 188 aaPredicted RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 NFKBIBQ15653 356 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 WSCD2Q2TBF2 565 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 ATP13A4Q4VNC1 1196 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 BOLA3Q53S33 107 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 CCDC122Q5T0U0 273 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 HES3Q5TGS1 186 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 ALKBH5Q6P6C2 394 aaKnown RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 RBFAQ8N0V3 343 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 PGBD5Q8N414 524 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 NIPA2Q8N8Q9 360 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 ZNF548Q8NEK5 533 aaPredicted RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 FUBP1Q96AE4 644 aaKnown RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 ECHDC3Q96DC8 303 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 ZNF641Q96N77 438 aaPredicted RBP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 NCAPGQ9BPX3 1015 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 DONSONQ9NYP3 566 aa10.53□□□□□ -0.72
PRPF40B-204ENST00000527253 MYLKQ15746 1914 aa10.52□□□□□ -0.72
PRPF40B-204ENST00000527253 FREM2Q5SZK8 3169 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 ZFHX4Q86UP3 3567 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 H3BRJ5 948 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 TRAFD1O14545 582 aaPredicted RBP10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 GCATO75600 419 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 CD48P09326 243 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 CKMT1AP12532 417 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 C6P13671 934 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 JUPP14923 745 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 JUNDP17535 347 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 GM2AP17900 193 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 LIG3P49916 1009 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 SUOXP51687 545 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 ZNF135P52742 658 aaPredicted RBP10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 NSUN2Q08J23 767 aaKnown RBP eCLIP10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 RALGDSQ12967 914 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 MMRN1Q13201 1228 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 ILKQ13418 452 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 C1orf61Q13536 156 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 IRF4Q15306 451 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 ASTE1Q2TB18 679 aaPredicted RBP10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 KCTD16Q68DU8 428 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 PARGQ86W56 976 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 PDCD7Q8N8D1 485 aaKnown RBP10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 FAM71BQ8TC56 605 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 TEKT4Q8WW24 435 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 RFFLQ8WZ73 363 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 APOLD1Q96LR9 279 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 PSKH2Q96QS6 385 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 TUBGCP5Q96RT8 1024 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 CINPQ9BW66 212 aaPredicted RBP10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 PACSIN1Q9BY11 444 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 SP110Q9HB58 689 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 NLGN3Q9NZ94 848 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 DKK4Q9UBT3 224 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 IP6K2Q9UHH9 426 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 ANAPC7Q9UJX3 599 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 ATP8A1Q9Y2Q0 1164 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 RAXQ9Y2V3 346 aa10.52□□□□□ -0.73
PRPF40B-204ENST00000527253 ANKRD36A6QL64 1941 aa10.51□□□□□ -0.73
PRPF40B-204ENST00000527253 CASC3O15234 703 aaKnown RBP10.51□□□□□ -0.73
PRPF40B-204ENST00000527253 MAFKO60675 156 aa10.51□□□□□ -0.73
PRPF40B-204ENST00000527253 CELA2BP08218 269 aaPredicted RBP10.51□□□□□ -0.73
PRPF40B-204ENST00000527253 CDK4P11802 303 aa10.51□□□□□ -0.73
PRPF40B-204ENST00000527253 CR2P20023 1033 aa10.51□□□□□ -0.73
PRPF40B-204ENST00000527253 XPAP23025 273 aaPredicted RBP10.51□□□□□ -0.73
PRPF40B-204ENST00000527253 MMP12P39900 470 aa10.51□□□□□ -0.73
PRPF40B-204ENST00000527253 ARL4AP40617 200 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms