RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ACTL6BO94805 426 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 METTL18O95568 372 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 STX2P32856 288 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 GJC1P36383 396 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 TECP42680 631 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 CENPAP49450 140 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 DVL1P1P54792 670 aaPredicted RBP2.84□□□□□ -1.95
NUP54-208ENST00000508604 AP2B1P63010 937 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 ARHGAP8P85298 464 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 GOLGA8FQ08AF8 430 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 GRIK2Q13002 908 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 SPARCL1Q14515 664 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 IL13RA2Q14627 380 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 ZNF876PQ49A33 203 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 KLHL17Q6TDP4 642 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 GTSCR1Q86UQ5 136 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 SPAG16Q8N0X2 631 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 ADAD2Q8NCV1 583 aaKnown RBP2.84□□□□□ -1.95
NUP54-208ENST00000508604 LGALS12Q96DT0 336 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 YME1L1Q96TA2 773 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 KRTAP4-3Q9BYR4 195 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 NOX4Q9NPH5 578 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 ENTPD7Q9NQZ7 604 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 SLC7A10Q9NS82 523 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 NLKQ9UBE8 527 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 RCE1Q9Y256 329 aa2.84□□□□□ -1.95
NUP54-208ENST00000508604 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 ANO9A1A5B4 782 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 TYW5A2RUC4 315 aaKnown RBP2.83□□□□□ -1.96
NUP54-208ENST00000508604 GOLGA6L3A6NEY3 463 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 ZNF587BE7ETH6 402 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 WNT9BO14905 357 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 WEE2P0C1S8 567 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 CDH1P12830 882 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 ARSAP15289 507 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 TM4SF4P48230 202 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 ME3Q16798 604 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 AP5B1Q2VPB7 878 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 TTC22Q5TAA0 569 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 ZNF497Q6ZNH5 498 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 DSG4Q86SJ6 1040 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 SATL1Q86VE3 508 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 SLC44A2Q8IWA5 706 aaPredicted RBP2.83□□□□□ -1.96
NUP54-208ENST00000508604 FAM186BQ8IYM0 893 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 DEPTORQ8TB45 409 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 LITAFQ99732 161 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 CHST12Q9NRB3 414 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 CNPY2Q9Y2B0 182 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 PRSS21Q9Y6M0 314 aa2.83□□□□□ -1.96
NUP54-208ENST00000508604 GREB1LQ9C091 1923 aaPredicted RBP2.83□□□□□ -1.96
NUP54-208ENST00000508604 TNFRSF6BO95407 300 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 SERPINC1P01008 464 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 TUBBP07437 444 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 ACP5P13686 325 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 CD53P19397 219 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 PNPLA4P41247 253 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 MTNR1AP48039 350 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 TERF1P54274 439 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 TUBB4BP68371 445 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 PTK2BQ14289 1009 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 RPE65Q16518 533 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 LRRC24Q50LG9 513 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 PDSS1Q5T2R2 415 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 ZC2HC1BQ5TFG8 222 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 FAM177A1Q8N128 213 aaPredicted RBP2.82□□□□□ -1.96
NUP54-208ENST00000508604 DNAAF1Q8NEP3 725 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 OR10V1Q8NGI7 309 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 HCAR2Q8TDS4 363 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 EID2BQ96D98 161 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 CDCA5Q96FF9 252 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 CDC14AQ9UNH5 594 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 KCNK7Q9Y2U2 307 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 CLDN16Q9Y5I7 305 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 PCDH7O60245 1069 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 ATP2C2O75185 946 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 NDUFB4O95168 129 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 TRIM27P14373 513 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 ABCB4P21439 1286 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 MVDP53602 400 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 ARSFP54793 590 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 AK2P54819 239 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 SLC18A2Q05940 514 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 BTKQ06187 659 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 THOC5Q13769 683 aaKnown RBP2.82□□□□□ -1.96
NUP54-208ENST00000508604 PPP6R3Q5H9R7 873 aaPredicted RBP2.82□□□□□ -1.96
NUP54-208ENST00000508604 ZNF484Q5JVG2 852 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 SRBD1Q8N5C6 995 aaKnown RBP2.82□□□□□ -1.96
NUP54-208ENST00000508604 MAPK1IP1LQ8NDC0 245 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 SLC24A4Q8NFF2 622 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 PJA1Q8NG27 643 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 MAGEC3Q8TD91 643 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 ZNF583Q96ND8 569 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 ZNF599Q96NL3 588 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 KXD1Q9BQD3 176 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 FKRPQ9H9S5 495 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 CYSLTR2Q9NS75 346 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 TMEM160Q9NX00 188 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 PCDHGB5Q9Y5G0 923 aa2.82□□□□□ -1.96
NUP54-208ENST00000508604 AKR1B15C9JRZ8 316 aaPredicted RBP2.81□□□□□ -1.96
NUP54-208ENST00000508604 RGS11O94810 467 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms