RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ACSBG2Q5FVE4 666 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 TIGD7Q6NT04 549 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 FAM171BQ6P995 826 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 PIP4K2CQ8TBX8 421 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 WBP2Q969T9 261 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 MRGPRX2Q96LB1 330 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 CDRT15Q96T59 188 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 SLC39A3Q9BRY0 314 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 POLR1EQ9GZS1 481 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 SLC24A3Q9HC58 644 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 RCOR3Q9P2K3 495 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 EVLQ9UI08 416 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 TAGLN3Q9UI15 199 aa13.84□□□□□ -0.19
CCDC88A-211ENST00000471947 SRRM3A6NNA2 597 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 ATP5HO75947 161 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 SYN1P17600 705 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 FGFR3P22607 806 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 GABRB3P28472 473 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 GSCP56915 257 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 RAB10P61026 200 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 SNX30Q5VWJ9 437 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 FAM151BQ6UXP7 276 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 KYAT3Q6YP21 454 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 ZC3HC1Q86WB0 502 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 ING5Q8WYH8 240 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 SLC9A7Q96T83 725 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 KCNK13Q9HB14 408 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 FBRSL1Q9HCM7 1045 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 TMEM161AQ9NX61 479 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 RRN3Q9NYV6 651 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 ZDHHC2Q9UIJ5 367 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 SOX13Q9UN79 622 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 CSF2RAP15509 400 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 GGT5P36269 586 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 RGRP47804 291 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 PTDSS1P48651 473 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 UGP2Q16851 508 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 XKR4Q5GH76 650 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 SIRPB2Q5JXA9 342 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 MARK2Q7KZI7 788 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 CAMK1DQ8IU85 385 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 CLDN19Q8N6F1 224 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 OR9I1Q8NGQ6 314 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 BCL7CQ8WUZ0 217 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 TUBGCP3Q96CW5 907 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 BTN2A3PQ96KV6 586 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 YIPF3Q9GZM5 350 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 PFDN4Q9NQP4 134 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 ENTPD7Q9NQZ7 604 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 ARHGEF3Q9NR81 526 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 CD274Q9NZQ7 290 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 ZMYM5Q9UJ78 669 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 TCAF1Q9Y4C2 921 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 MGAMO43451 1857 aa13.83□□□□□ -0.2
CCDC88A-211ENST00000471947 PRR23AA6NEV1 266 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 BTN3A1O00481 513 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 MUSKO15146 869 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 GOT2P00505 430 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 OAS1P00973 400 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 IDH3AP50213 366 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 SGSHP51688 502 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 TBL3Q12788 808 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 LRRC8EQ6NSJ5 796 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 GK5Q6ZS86 529 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CCNJLQ8IV13 435 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 SH3RF2Q8TEC5 729 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 RCN3Q96D15 328 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 MTFMTQ96DP5 389 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 RHOJQ9H4E5 214 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 DNMT3LQ9UJW3 386 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 SH3BP1Q9Y3L3 701 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 OTOFQ9HC10 1997 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CCDC162PA2VCL2 907 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CCL16O15467 120 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CCND1P24385 295 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CCNCP24863 283 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 MZF1P28698 734 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 ARRB2P32121 409 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 MGAT3Q09327 533 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 BRMS1LQ5PSV4 323 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 STXBP5Q5T5C0 1151 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 MBLAC2Q68D91 279 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 DNAJC14Q6Y2X3 702 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 PTGR2Q8N8N7 351 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 SCG3Q8WXD2 468 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 KCNA7Q96RP8 456 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 TRIM62Q9BVG3 475 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 SMOC2Q9H3U7 446 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 MID1IP1Q9NPA3 183 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CD84Q9UIB8 345 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 CDYLQ9Y232 598 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 ANGPTL3Q9Y5C1 460 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 A0A1W2PRU2 124 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 HEATR9A2RTY3 570 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 UBXN8O00124 270 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 MGRN1O60291 552 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 DLX3O60479 287 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 PEX11AO75192 247 aa13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 NELFEP18615 380 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-211ENST00000471947 UGT1A6P19224 532 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms