RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 CLDN16Q9Y5I7 305 aa5.84□□□□□ -1.47
CCDC39-202ENST00000471307 ARHGEF28Q8N1W1 1705 aaKnown RBP5.84□□□□□ -1.47
CCDC39-202ENST00000471307 PTPRUQ92729 1446 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 STRCQ7RTU9 1775 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 KNDC1Q76NI1 1749 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 hCG_1642624A0A1W2PR95 340 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 BTBD18B2RXH4 712 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 HBP1O60381 514 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 TK1P04183 234 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 ADD2P35612 726 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 RPL36AP83881 106 aaKnown RBP5.83□□□□□ -1.48
CCDC39-202ENST00000471307 TRIM14Q14142 442 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 PLCB4Q15147 1175 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 RPE65Q16518 533 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 ZNF484Q5JVG2 852 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 ZMIZ2Q8NF64 920 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 RMI1Q9H9A7 625 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 KIF17Q9P2E2 1029 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 CD207Q9UJ71 328 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 SLC45A1Q9Y2W3 748 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 PCDHGB1Q9Y5G3 927 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 MORC2Q9Y6X9 1032 aaPredicted RBP5.83□□□□□ -1.48
CCDC39-202ENST00000471307 CPS1P31327 1500 aa5.83□□□□□ -1.48
CCDC39-202ENST00000471307 PTCH1Q13635 1447 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 DISP3Q9P2K9 1392 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 QRICH2Q9H0J4 1663 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 FAM157AC9JC47 383 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 KCNJ13O60928 360 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 ADORA2A-AS1P86434 159 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 PRKG1Q13976 671 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 IL13RA2Q14627 380 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 ATG9BQ674R7 924 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 GJB7Q6PEY0 223 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 FJX1Q86VR8 437 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 OR4N2Q8NGD1 307 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 CSGALNACT1Q8TDX6 532 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 RTP4Q96DX8 246 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 CDK19Q9BWU1 502 aa5.82□□□□□ -1.48
CCDC39-202ENST00000471307 AGO1Q9UL18 857 aaKnown RBP5.82□□□□□ -1.48
CCDC39-202ENST00000471307 PLEKHH1Q9ULM0 1364 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 TARSL2A2RTX5 802 aaKnown RBP5.81□□□□□ -1.48
CCDC39-202ENST00000471307 ITM2AO43736 263 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 CBX6O95503 412 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 ACTR2P61160 394 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 CUL4BQ13620 913 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 IZUMO4Q1ZYL8 232 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 CTXN3Q4LDR2 81 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 DCAF6Q58WW2 860 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 CBWD5Q5RIA9 395 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 FAM83BQ5T0W9 1011 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 CCDC174Q6PII3 467 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 TCP11L2Q8N4U5 519 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 MIGA1Q8NAN2 632 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 LMO3Q8TAP4 145 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 SH3KBP1Q96B97 665 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 MASTLQ96GX5 879 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 NPLQ9BXD5 320 aaPredicted RBP5.81□□□□□ -1.48
CCDC39-202ENST00000471307 RASSF1Q9NS23 344 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 ATP8A2Q9NTI2 1148 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 DERAQ9Y315 318 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 XRN1Q8IZH2 1706 aaKnown RBP5.81□□□□□ -1.48
CCDC39-202ENST00000471307 NCOA3Q9Y6Q9 1424 aa5.81□□□□□ -1.48
CCDC39-202ENST00000471307 NINLQ9Y2I6 1382 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 DENND3A2RUS2 1198 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 PPP1R3DO95685 299 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 DCTDP32321 178 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 CHKAP35790 457 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 ST3GAL1Q11201 340 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 AP5B1Q2VPB7 878 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 TUBB8Q3ZCM7 444 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 C9orf50Q5SZB4 431 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 DENND1BQ6P3S1 775 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 PRSS57Q6UWY2 283 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 Q6ZTC4 211 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 C16orf82Q7Z2V1 217 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 TMEM57Q8N5G2 664 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 SETD9Q8NE22 299 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 SPPL3Q8TCT6 385 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 TBC1D22AQ8WUA7 517 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 SLC25A33Q9BSK2 321 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 LHPPQ9H008 270 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 MYH16Q9H6N6 1097 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 CHODLQ9H9P2 273 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 NWD1Q149M9 1564 aa5.8□□□□□ -1.48
CCDC39-202ENST00000471307 NKTRP30414 1462 aaKnown RBP5.79□□□□□ -1.48
CCDC39-202ENST00000471307 A0A1B0GUV1 79 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 SERPINI2O75830 405 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 SERPINC1P01008 464 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 IL1AP01583 271 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 ZNF12P17014 697 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 MYF6P23409 242 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 C9orf57Q5W0N0 161 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 SPSB3Q6PJ21 355 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 NEK10Q6ZWH5 1172 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 H1FNTQ75WM6 255 aaPredicted RBP5.79□□□□□ -1.48
CCDC39-202ENST00000471307 CERS3Q8IU89 383 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 ANKRD44Q8N8A2 993 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 MCPH1Q8NEM0 835 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 LINS1Q8NG48 757 aa5.79□□□□□ -1.48
CCDC39-202ENST00000471307 FIZ1Q96SL8 496 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms