RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 AEBP2Q6ZN18 517 aaPredicted RBP33.95■■■■□ 3.03
CCDC39-202ENST00000471307 CHIC1Q5VXU3 224 aa32.97■■■□□ 2.87
CCDC39-202ENST00000471307 SENP3Q9H4L4 574 aaPredicted RBP28.99■■■□□ 2.23
CCDC39-202ENST00000471307 PHF23Q9BUL5 403 aaPredicted RBP28.89■■■□□ 2.22
CCDC39-202ENST00000471307 FOXD1Q16676 465 aa26.84■■□□□ 1.89
CCDC39-202ENST00000471307 PLPPR3Q6T4P5 718 aa26.68■■□□□ 1.86
CCDC39-202ENST00000471307 PPP6R1Q9UPN7 881 aa25.55■■□□□ 1.68
CCDC39-202ENST00000471307 ADRA2BP18089 450 aa25.51■■□□□ 1.67
CCDC39-202ENST00000471307 PIAS4Q8N2W9 510 aaPredicted RBP25.27■■□□□ 1.64
CCDC39-202ENST00000471307 MSH5O43196 834 aa24.98■■□□□ 1.59
CCDC39-202ENST00000471307 SCAF1Q9H7N4 1312 aaKnown RBP23.52■■□□□ 1.36
CCDC39-202ENST00000471307 PPP4R3CPQ6ZMV5 832 aa23.42■■□□□ 1.34
CCDC39-202ENST00000471307 MAPK8IP2Q13387 824 aaPredicted RBP23.2■■□□□ 1.3
CCDC39-202ENST00000471307 POTEDQ86YR6 584 aa23.15■■□□□ 1.3
CCDC39-202ENST00000471307 DMRT2Q9Y5R5 561 aa23.06■■□□□ 1.28
CCDC39-202ENST00000471307 CNKSR2Q8WXI2 1034 aa22.88■■□□□ 1.25
CCDC39-202ENST00000471307 NCBP3Q53F19 620 aaKnown RBP22.8■■□□□ 1.24
CCDC39-202ENST00000471307 RNF216Q9NWF9 866 aaPredicted RBP22.52■■□□□ 1.2
CCDC39-202ENST00000471307 KCNA4P22459 653 aa22.51■■□□□ 1.19
CCDC39-202ENST00000471307 HOXD11P31277 338 aaPredicted RBP22.49■■□□□ 1.19
CCDC39-202ENST00000471307 NPM3O75607 178 aaKnown RBP22.38■■□□□ 1.17
CCDC39-202ENST00000471307 DCAF8L1A6NGE4 600 aa21.99■■□□□ 1.11
CCDC39-202ENST00000471307 DNAJC5BQ9UF47 199 aa21.95■■□□□ 1.1
CCDC39-202ENST00000471307 SLC4A1APQ9BWU0 796 aaKnown RBP21.42■■□□□ 1.02
CCDC39-202ENST00000471307 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.38■■□□□ 1.01
CCDC39-202ENST00000471307 RNF39Q9H2S5 420 aa21.33■■□□□ 1.01
CCDC39-202ENST00000471307 SLC4A2P04920 1241 aa21.18■□□□□ 0.98
CCDC39-202ENST00000471307 C1QBPQ07021 282 aaKnown RBP21.11■□□□□ 0.97
CCDC39-202ENST00000471307 U3KPZ7 1027 aaPredicted RBP20.99■□□□□ 0.95
CCDC39-202ENST00000471307 CACNB1Q02641 598 aaPredicted RBP20.95■□□□□ 0.94
CCDC39-202ENST00000471307 FOXD4L1Q9NU39 408 aa20.86■□□□□ 0.93
CCDC39-202ENST00000471307 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.77■□□□□ 0.92
CCDC39-202ENST00000471307 HNRNPUL2Q1KMD3 747 aaKnown RBP20.77■□□□□ 0.92
CCDC39-202ENST00000471307 MYCNP04198 464 aaPredicted RBP20.76■□□□□ 0.91
CCDC39-202ENST00000471307 ZBTB22O15209 634 aa20.67■□□□□ 0.9
CCDC39-202ENST00000471307 APLP2Q06481 763 aa20.64■□□□□ 0.89
CCDC39-202ENST00000471307 SAMD1Q6SPF0 538 aaPredicted RBP20.64■□□□□ 0.89
CCDC39-202ENST00000471307 SPINK5Q9NQ38 1064 aaPredicted RBP20.45■□□□□ 0.86
CCDC39-202ENST00000471307 CAPN15O75808 1086 aa20.42■□□□□ 0.86
CCDC39-202ENST00000471307 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.85
CCDC39-202ENST00000471307 CSRNP3Q8WYN3 585 aa20.35■□□□□ 0.85
CCDC39-202ENST00000471307 ZNF219Q9P2Y4 722 aaPredicted RBP20.34■□□□□ 0.85
CCDC39-202ENST00000471307 ATXN8OSP0DMR3 200 aa20.24■□□□□ 0.83
CCDC39-202ENST00000471307 TRHP20396 242 aaPredicted RBP20.23■□□□□ 0.83
CCDC39-202ENST00000471307 DSG3P32926 999 aa20.17■□□□□ 0.82
CCDC39-202ENST00000471307 ATF5Q9Y2D1 282 aaPredicted RBP20.09■□□□□ 0.81
CCDC39-202ENST00000471307 ABCB7O75027 752 aa19.95■□□□□ 0.78
CCDC39-202ENST00000471307 POLA2Q14181 598 aa19.87■□□□□ 0.77
CCDC39-202ENST00000471307 ZBTB12Q9Y330 459 aaPredicted RBP19.65■□□□□ 0.74
CCDC39-202ENST00000471307 FBLN2P98095 1184 aa19.4■□□□□ 0.7
CCDC39-202ENST00000471307 RBM42Q9BTD8 480 aaKnown RBP19.33■□□□□ 0.68
CCDC39-202ENST00000471307 MKRN4PQ13434 485 aaPredicted RBP19.24■□□□□ 0.67
CCDC39-202ENST00000471307 OSCARQ8IYS5 282 aa19.18■□□□□ 0.66
CCDC39-202ENST00000471307 SPDYE2BA6NHP3 402 aa19.05■□□□□ 0.64
CCDC39-202ENST00000471307 SPDYE6P0CI01 402 aa19.05■□□□□ 0.64
CCDC39-202ENST00000471307 SPDYE2Q495Y8 402 aa19.05■□□□□ 0.64
CCDC39-202ENST00000471307 AKT1S1Q96B36 256 aa18.99■□□□□ 0.63
CCDC39-202ENST00000471307 ZNF692Q9BU19 519 aaPredicted RBP18.87■□□□□ 0.61
CCDC39-202ENST00000471307 SSUH2Q9Y2M2 353 aa18.85■□□□□ 0.61
CCDC39-202ENST00000471307 REM2Q8IYK8 340 aaPredicted RBP18.75■□□□□ 0.59
CCDC39-202ENST00000471307 SPDYE4A6NLX3 237 aa18.71■□□□□ 0.59
CCDC39-202ENST00000471307 PABPN1Q86U42 306 aaKnown RBP eCLIP18.59■□□□□ 0.57
CCDC39-202ENST00000471307 CHRDL2Q6WN34 429 aa18.56■□□□□ 0.56
CCDC39-202ENST00000471307 SPDYE1Q8NFV5 336 aaPredicted RBP18.55■□□□□ 0.56
CCDC39-202ENST00000471307 PITPNM1O00562 1244 aa18.52■□□□□ 0.56
CCDC39-202ENST00000471307 PROM2Q8N271 834 aa18.42■□□□□ 0.54
CCDC39-202ENST00000471307 FKBP8Q14318 412 aa18.41■□□□□ 0.54
CCDC39-202ENST00000471307 CLEC11AQ9Y240 323 aa18.39■□□□□ 0.53
CCDC39-202ENST00000471307 STAG3Q9UJ98 1225 aa18.34■□□□□ 0.53
CCDC39-202ENST00000471307 POTEHQ6S545 545 aa18.29■□□□□ 0.52
CCDC39-202ENST00000471307 FXR2P51116 673 aaKnown RBP eCLIP18.27■□□□□ 0.52
CCDC39-202ENST00000471307 PRR29P0C7W0 189 aa18.23■□□□□ 0.51
CCDC39-202ENST00000471307 PIP4P2Q8N4L2 257 aa18.23■□□□□ 0.51
CCDC39-202ENST00000471307 PRKAR2AP13861 404 aaKnown RBP18.06■□□□□ 0.48
CCDC39-202ENST00000471307 FBXO3Q9UK99 471 aa17.96■□□□□ 0.47
CCDC39-202ENST00000471307 CHADLQ6NUI6 762 aa17.92■□□□□ 0.46
CCDC39-202ENST00000471307 CREBZFQ9NS37 354 aa17.91■□□□□ 0.46
CCDC39-202ENST00000471307 FARP1Q9Y4F1 1045 aaPredicted RBP17.82■□□□□ 0.44
CCDC39-202ENST00000471307 PLEKHG5O94827 1062 aa17.8■□□□□ 0.44
CCDC39-202ENST00000471307 MIER1Q8N108 512 aa17.76■□□□□ 0.43
CCDC39-202ENST00000471307 HAX1O00165 279 aa17.72■□□□□ 0.43
CCDC39-202ENST00000471307 PLCD3Q8N3E9 789 aa17.71■□□□□ 0.43
CCDC39-202ENST00000471307 MNX1P50219 401 aaPredicted RBP17.7■□□□□ 0.42
CCDC39-202ENST00000471307 NPM1P06748 294 aaKnown RBP eCLIP17.68■□□□□ 0.42
CCDC39-202ENST00000471307 C19orf67A6NJJ6 358 aa17.66■□□□□ 0.42
CCDC39-202ENST00000471307 VASPP50552 380 aaPredicted RBP17.65■□□□□ 0.42
CCDC39-202ENST00000471307 ZBTB47Q9UFB7 747 aaPredicted RBP17.65■□□□□ 0.42
CCDC39-202ENST00000471307 CD44P16070 742 aaKnown RBP17.53■□□□□ 0.4
CCDC39-202ENST00000471307 EVX2Q03828 476 aa17.48■□□□□ 0.39
CCDC39-202ENST00000471307 SP7Q8TDD2 431 aaPredicted RBP17.47■□□□□ 0.39
CCDC39-202ENST00000471307 PAK3O75914 559 aaPredicted RBP17.46■□□□□ 0.39
CCDC39-202ENST00000471307 KLHL34Q8N239 644 aa17.38■□□□□ 0.37
CCDC39-202ENST00000471307 ZRANB1Q9UGI0 708 aa17.38■□□□□ 0.37
CCDC39-202ENST00000471307 CLCN6P51797 869 aa17.35■□□□□ 0.37
CCDC39-202ENST00000471307 NUBP1P53384 320 aa17.35■□□□□ 0.37
CCDC39-202ENST00000471307 IFNLR1Q8IU57 520 aaPredicted RBP17.35■□□□□ 0.37
CCDC39-202ENST00000471307 ZNF579Q8NAF0 562 aaKnown RBP17.35■□□□□ 0.37
CCDC39-202ENST00000471307 RASEFQ8IZ41 740 aa17.31■□□□□ 0.36
CCDC39-202ENST00000471307 TSPYL2Q9H2G4 693 aaPredicted RBP17.27■□□□□ 0.36
CCDC39-202ENST00000471307 FAM212AQ96EL1 285 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms