RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 RPL26P61254 145 aaKnown RBP15.91■□□□□ 0.14
USP40-206ENST00000443711 MRPS25P82663 173 aaKnown RBP15.91■□□□□ 0.14
USP40-206ENST00000443711 KCTD19Q17RG1 926 aaPredicted RBP15.91■□□□□ 0.14
USP40-206ENST00000443711 POM121L1PQ3SYA9 428 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 KCTD11Q693B1 232 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 FBXL19Q6PCT2 694 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 KDELC2Q7Z4H8 507 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 RASSF3Q86WH2 238 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 CACUL1Q86Y37 369 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 C1orf210Q8IVY1 113 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 NDUFAF2Q8N183 169 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 PDCD7Q8N8D1 485 aaKnown RBP15.91■□□□□ 0.14
USP40-206ENST00000443711 NOA1Q8NC60 698 aaKnown RBP15.91■□□□□ 0.14
USP40-206ENST00000443711 GANCQ8TET4 914 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 MRGPRX2Q96LB1 330 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 OMDQ99983 421 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 ERP44Q9BS26 406 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 FSD1LQ9BXM9 530 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 ADGRE3Q9BY15 652 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 HDAC8Q9BY41 377 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 RAB17Q9H0T7 212 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 LRRC40Q9H9A6 602 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 EBF1Q9UH73 591 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 PHTF1Q9UMS5 762 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 RPL26L1Q9UNX3 145 aaKnown RBP15.91■□□□□ 0.14
USP40-206ENST00000443711 NCKAP1Q9Y2A7 1128 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 UTP11Q9Y3A2 253 aaKnown RBP15.91■□□□□ 0.14
USP40-206ENST00000443711 LOC285095A0A1B0GVY8 99 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 K7ESF4 209 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 AP2A1O95782 977 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 NDST3O95803 873 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 CPP00450 1065 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 PRLP01236 227 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 APRTP07741 180 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 PDHA1P08559 390 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 TIMP2P16035 220 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 XPAP23025 273 aaPredicted RBP15.9■□□□□ 0.14
USP40-206ENST00000443711 NFKBIAP25963 317 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 SUOXP51687 545 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 NEK3P51956 506 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 METAP1P53582 386 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 EPHB1P54762 984 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 CDK16Q00536 496 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 NAPEPLDQ6IQ20 393 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 USP30Q70CQ3 517 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 ERN2Q76MJ5 926 aaKnown RBP15.9■□□□□ 0.14
USP40-206ENST00000443711 PARS2Q7L3T8 475 aaKnown RBP15.9■□□□□ 0.14
USP40-206ENST00000443711 PCGF5Q86SE9 256 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 LINC00523Q86TU6 105 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 TTC7BQ86TV6 843 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 KBTBD6Q86V97 674 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 HDDC3Q8N4P3 179 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 MDGA1Q8NFP4 955 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 SPOCK2Q92563 424 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 TBL1YQ9BQ87 522 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 FICDQ9BVA6 458 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 C11orf16Q9NQ32 467 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 ITM2CQ9NQX7 267 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 PRMT8Q9NR22 394 aaPredicted RBP15.9■□□□□ 0.14
USP40-206ENST00000443711 EIF2B3Q9NR50 452 aaKnown RBP15.9■□□□□ 0.14
USP40-206ENST00000443711 FBXL12Q9NXK8 326 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 TPX2Q9ULW0 747 aaKnown RBP15.9■□□□□ 0.14
USP40-206ENST00000443711 A0A0C4DFX4 3053 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 CUL9Q8IWT3 2517 aa15.9■□□□□ 0.14
USP40-206ENST00000443711 A0A1W2PP55 124 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 PRR33A8MZF0 331 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 DNALI1O14645 258 aaPredicted RBP15.89■□□□□ 0.13
USP40-206ENST00000443711 NDC80O14777 642 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 RNASEH2AO75792 299 aaKnown RBP15.89■□□□□ 0.13
USP40-206ENST00000443711 SUN1O94901 812 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 SLU7O95391 586 aaKnown RBP15.89■□□□□ 0.13
USP40-206ENST00000443711 AGTP01019 485 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 TPSB2P20231 275 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 IVDP26440 423 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 ADRA1AP35348 466 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 DRD3P35462 400 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 MAGEA6P43360 314 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 TUBB4BP68371 445 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 CNTN1Q12860 1018 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 SPARCL1Q14515 664 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 TPSAB1Q15661 275 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 UGP2Q16851 508 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 TMEM31Q5JXX7 168 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 SYCP2LQ5T4T6 812 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 IZUMO3Q5VZ72 239 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 RANBP10Q6VN20 620 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.89■□□□□ 0.13
USP40-206ENST00000443711 PPIL6Q8IXY8 311 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 AADATQ8N5Z0 425 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 BBOF1Q8ND07 529 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 LPCAT1Q8NF37 534 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 PIH1D2Q8WWB5 315 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 CPT1BQ92523 772 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 RAB7BQ96AH8 199 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 RMDN1Q96DB5 314 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 SNF8Q96H20 258 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 TRIB3Q96RU7 358 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 C1QTNF1Q9BXJ1 281 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 TRIM31Q9BZY9 425 aa15.89■□□□□ 0.13
USP40-206ENST00000443711 RRAGDQ9NQL2 400 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms