RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 HGH1Q9BTY7 390 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 SPAG4Q9NPE6 437 aa18.67■□□□□ 0.58
USP48-204ENST00000400301 KANSL1LA0AUZ9 987 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 TBKBP1A7MCY6 615 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 IPO13O94829 963 aaKnown RBP18.66■□□□□ 0.58
USP48-204ENST00000400301 GUCA1CO95843 209 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 ITGALP20701 1170 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 RUBCNLQ9H714 662 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 SCAMP3O14828 347 aaKnown RBP18.66■□□□□ 0.58
USP48-204ENST00000400301 MYO1DO94832 1006 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 SP100P23497 879 aaPredicted RBP18.66■□□□□ 0.58
USP48-204ENST00000400301 ATP5C1P36542 298 aaKnown RBP18.66■□□□□ 0.58
USP48-204ENST00000400301 DSC2Q02487 901 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 PTPRNQ16849 979 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 THEMIS2Q5TEJ8 643 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 HECTD2Q5U5R9 776 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 C16orf87Q6PH81 154 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 C16orf59Q7L2K0 433 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 UCMAQ8WVF2 138 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 SMOQ99835 787 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 BTRCQ9Y297 605 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 CNMDO75829 334 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 CKMP06732 381 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 UQCRBP14927 111 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 CHRNB3Q05901 458 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 SOX4Q06945 474 aaPredicted RBP18.66■□□□□ 0.58
USP48-204ENST00000400301 MBLAC2Q68D91 279 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 PRMT9Q6P2P2 845 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 MAB21L3Q8N8X9 362 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 ZNF555Q8NEP9 628 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 OR56A4Q8NGH8 313 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 OLIG1Q8TAK6 271 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 SEPT8Q92599 483 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 SYT17Q9BSW7 474 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 GMIPQ9P107 970 aa18.66■□□□□ 0.58
USP48-204ENST00000400301 DUSP11O75319 330 aaKnown RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 MAP4P27816 1152 aaKnown RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 HOXA11P31270 313 aaPredicted RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 CYP51A1Q16850 503 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 SMYD5Q6GMV2 418 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 PTCD2Q8WV60 388 aaKnown RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 GRIP2Q9C0E4 1043 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 SMCHD1A6NHR9 2005 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 DNAJC25-GNG10A0A024R161 153 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 ZBTB42B2RXF5 422 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 ALDOAP04075 364 aaKnown RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 LYNP07948 512 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 PAX3P23760 479 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 PEX2P28328 305 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 GSTT1P30711 240 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 PLEKHG4Q58EX7 1191 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 HEXDCQ8WVB3 486 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 CCDC28BQ9BUN5 200 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 PRDM5Q9NQX1 630 aaPredicted RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 COL24A1Q17RW2 1714 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 CD3EAPO15446 510 aaKnown RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 TLR5O60602 858 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 HGFP14210 728 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 PCLAFQ15004 111 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 GPR158Q5T848 1215 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 TMEM198Q66K66 360 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 SCIMPQ6UWF3 145 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 AMIGO2Q86SJ2 522 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 CLYBLQ8N0X4 340 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 SLC25A51Q9H1U9 297 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 R3HDMLQ9H3Y0 253 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 KIF17Q9P2E2 1029 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 NEMP2A6NFY4 417 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 HOXA2O43364 376 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 BEST1O76090 585 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 SNUPNO95149 360 aaKnown RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 SATB1Q01826 763 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 ILF2Q12905 390 aaKnown RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 ZBTB17Q13105 803 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 STXBP5Q5T5C0 1151 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 GPSM1Q86YR5 675 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 CFAP52Q8N1V2 620 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 DTNBP1Q96EV8 351 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 RMND5BQ96G75 393 aaPredicted RBP18.65■□□□□ 0.58
USP48-204ENST00000400301 TBATAQ96M53 351 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 OR52B2Q96RD2 323 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 CRTAC1Q9NQ79 661 aa18.65■□□□□ 0.58
USP48-204ENST00000400301 SLC7A2P52569 658 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 IL2P60568 153 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 OCA2Q04671 838 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 TAF10Q12962 218 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 CACHD1Q5VU97 1274 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 CDK5RAP1Q96SZ6 601 aaKnown RBP18.64■□□□□ 0.57
USP48-204ENST00000400301 MYO18AQ92614 2054 aaKnown RBP18.64■□□□□ 0.57
USP48-204ENST00000400301 FAM72CH0Y354 149 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 IRAK2O43187 625 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 RANBP1P43487 201 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 BFSP2Q13515 415 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 ARHGEF7Q14155 803 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 FAM72AQ5TYM5 149 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 FAM72DQ6L9T8 149 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 KIAA0408Q6ZU52 694 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 GPR141Q7Z602 305 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 FAM72BQ86X60 149 aa18.64■□□□□ 0.57
USP48-204ENST00000400301 RTL3Q8N8U3 475 aaKnown RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms