RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZNF607Q96SK3 696 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 HMG20AQ9NP66 347 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 TOR4AQ9NXH8 423 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 MTRRQ9UBK8 725 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 IKZF2Q9UKS7 526 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 CD163L1Q9NR16 1453 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 MAGEA13PA6NCF6 341 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 OR10H3O60404 316 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 PEX11AO75192 247 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 TNFRSF21O75509 655 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 OR5F1O95221 314 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 KCNH1O95259 989 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 ZCCHC18P0CG32 403 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 MNDAP41218 407 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 PSMD8P48556 350 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 CDK7P50613 346 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 PCBP1Q15365 356 aaKnown RBP eCLIP7.24□□□□□ -1.25
UPF2-203ENST00000397053 C16orf46Q6P387 395 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 MZT2AQ6P582 158 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 NIPA1Q7RTP0 329 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 MTDHQ86UE4 582 aaKnown RBP7.24□□□□□ -1.25
UPF2-203ENST00000397053 GPR180Q86V85 440 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 STX12Q86Y82 276 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 GALNT13Q8IUC8 556 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 PTGR2Q8N8N7 351 aaPredicted RBP7.24□□□□□ -1.25
UPF2-203ENST00000397053 FAM98AQ8NCA5 519 aaKnown RBP7.24□□□□□ -1.25
UPF2-203ENST00000397053 MYCBPAPQ8TBZ2 947 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 MAGEB18Q96M61 343 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 BHLHE41Q9C0J9 482 aaPredicted RBP7.24□□□□□ -1.25
UPF2-203ENST00000397053 RPS6KA6Q9UK32 745 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 SDK1Q7Z5N4 2213 aa7.24□□□□□ -1.25
UPF2-203ENST00000397053 LOC100506127A0A0U1RQW1 187 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 TLX3O43711 291 aaPredicted RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 HCN1O60741 890 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 FKBP6O75344 327 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 LTA4HP09960 611 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 CCDC166P0CW27 439 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 ME2P23368 584 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 ITGA3P26006 1051 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 CASRP41180 1078 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 DHPSP49366 369 aaPredicted RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 CXCR3P49682 368 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 MBTD1Q05BQ5 628 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 DUSP4Q13115 394 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 SMCO1Q147U7 214 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 GRM3Q14832 879 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 XKR4Q5GH76 650 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 CELF3Q5SZQ8 465 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 CXXC5Q7LFL8 322 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 TMC8Q8IU68 726 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 TTC29Q8NA56 475 aaPredicted RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 CYP2W1Q8TAV3 490 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 CLP1Q92989 425 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 RBM18Q96H35 190 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 LMLNQ96KR4 655 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 CAPNS2Q96L46 248 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 GAL3ST4Q96RP7 486 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 ZDHHC4Q9NPG8 344 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 PHF24Q9UPV7 400 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 PIGNO95427 931 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 LAMP2P13473 410 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 RBL1P28749 1068 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 IL12RB1P42701 662 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 DGKEP52429 567 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 MANFP55145 182 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 KCNMA1Q12791 1236 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 GRSF1Q12849 480 aaKnown RBP eCLIP7.23□□□□□ -1.25
UPF2-203ENST00000397053 TRAF3Q13114 568 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 DGCR6Q14129 220 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 MAPK11Q15759 364 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 SGCBQ16585 318 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 FKBP1CQ5VVH2 108 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 TMC5Q6UXY8 1006 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 OAFQ86UD1 273 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 PSTKQ8IV42 348 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 SMPDL3BQ92485 455 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 AIF1LQ9BQI0 150 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 THAP1Q9NVV9 213 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 C1orf167Q5SNV9 1468 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 PTPRJQ12913 1337 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 A0A087X1B8 175 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 TMEM150BA6NC51 233 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 SLC31A1O15431 190 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 RGS20O76081 388 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 PRNPP04156 253 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 IFNA6P05013 189 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 UGT2B4P06133 528 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 CCNA2P20248 432 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 TCEA1P23193 301 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 CDH5P33151 784 aaPredicted RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 PTPN9P43378 593 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 ABCG1P45844 678 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 GALNT3Q14435 633 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 NR1D2Q14995 579 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 NEDD8Q15843 81 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 CAPN13Q6MZZ7 669 aaPredicted RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 NOA1Q8NC60 698 aaKnown RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 OR6K2Q8NGY2 324 aa7.23□□□□□ -1.25
UPF2-203ENST00000397053 MAGEE2Q8TD90 523 aaPredicted RBP7.23□□□□□ -1.25
UPF2-203ENST00000397053 PIGKQ92643 395 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms