RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 GFRA2O00451 464 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 NARSO43776 548 aaKnown RBP15.27■□□□□ 0.03
SCAF11-204ENST00000395454 RAMP2O60895 175 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 ADH5P11766 374 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 HOXD9P28356 352 aaPredicted RBP15.27■□□□□ 0.03
SCAF11-204ENST00000395454 MAGEA12P43365 314 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 CORO7P57737 925 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 TDGQ13569 410 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 CERCAMQ5T4B2 595 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 CGB2Q6NT52 195 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 KDELC1Q6UW63 502 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 TAX1BP1Q86VP1 789 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 SPATA22Q8NHS9 363 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 CSGALNACT1Q8TDX6 532 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 USP33Q8TEY7 942 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 CABS1Q96KC9 395 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 CPNE1Q99829 537 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 PDFQ9HBH1 243 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 SLC17A7Q9P2U7 560 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 TICRRQ7Z2Z1 1910 aa15.27■□□□□ 0.03
SCAF11-204ENST00000395454 A0A1B0GVM2 712 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 TCAF2A6NFQ2 919 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 H0Y626 953 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 GOLGA8RI6L899 631 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 MT-CYBP00156 380 aaPredicted RBP15.26■□□□□ 0.03
SCAF11-204ENST00000395454 IL1BP01584 269 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 OR1E1P30953 314 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 CRHR1P34998 444 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 GP5P40197 560 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 CDH18Q13634 790 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 MPP7Q5T2T1 576 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 ALG1LQ6GMV1 187 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 CARNMT1Q8N4J0 409 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 NAT16Q8N8M0 369 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 ANKS4BQ8N8V4 417 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 ZNF669Q96BR6 464 aaPredicted RBP15.26■□□□□ 0.03
SCAF11-204ENST00000395454 MRGPRX2Q96LB1 330 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 ZNF599Q96NL3 588 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 SRPK1Q96SB4 655 aaKnown RBP15.26■□□□□ 0.03
SCAF11-204ENST00000395454 KLF6Q99612 283 aaPredicted RBP15.26■□□□□ 0.03
SCAF11-204ENST00000395454 PLLPQ9Y342 182 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 STARD13Q9Y3M8 1113 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 PSAT1Q9Y617 370 aa15.26■□□□□ 0.03
SCAF11-204ENST00000395454 J3KR12 359 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 PRAMEF11O60813 436 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 CLDN11O75508 207 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 PENKP01210 267 aaPredicted RBP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 CDH4P55283 916 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 POLD3Q15054 466 aaPredicted RBP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 ITPRIPL2Q3MIP1 535 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 PCID2Q5JVF3 399 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 MFN1Q8IWA4 741 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 ELAC2Q9BQ52 826 aaKnown RBP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 MARK1Q9P0L2 795 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 ZFATQ9P243 1243 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 C19orf67A6NJJ6 358 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 COPEO14579 308 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 KLF11O14901 512 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 EDF1O60869 148 aaKnown RBP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 LUC7L3O95232 432 aaKnown RBP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 ALDOAP04075 364 aaKnown RBP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 MMP2P08253 660 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 SLC10A7Q0GE19 358 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 ZNF177Q13360 481 aaPredicted RBP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 BMPR2Q13873 1038 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 SLC14A2Q15849 920 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 DBN1Q16643 649 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 TEDDM1Q5T9Z0 273 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 GRTP1Q5TC63 336 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 MARC1Q5VT66 337 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 PKN3Q6P5Z2 889 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 CDHR3Q6ZTQ4 885 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 CHST9Q7L1S5 443 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 SPATA21Q7Z572 469 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.25■□□□□ 0.03
SCAF11-204ENST00000395454 CNTN4Q8IWV2 1026 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 LRRC8CQ8TDW0 803 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 CCT6BQ92526 530 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 MFSD3Q96ES6 412 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 APOL2Q9BQE5 337 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 PLCD4Q9BRC7 762 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 MAGEH1Q9H213 219 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 SP110Q9HB58 689 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 UBP1Q9NZI7 540 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 CLEC4EQ9ULY5 219 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 F5P12259 2224 aa15.25■□□□□ 0.03
SCAF11-204ENST00000395454 HOXC11O43248 304 aaPredicted RBP15.24■□□□□ 0.03
SCAF11-204ENST00000395454 SIN3BO75182 1162 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 ITGA2BP08514 1039 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 ERVK-10P10266 1014 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 SRFP11831 508 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 GJA4P35212 333 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 NUMBP49757 651 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 CSE1LP55060 971 aaKnown RBP15.24■□□□□ 0.03
SCAF11-204ENST00000395454 IFT88Q13099 833 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 MROH9Q5TGP6 573 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 RASSF3Q86WH2 238 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 RNF135Q8IUD6 432 aa15.24■□□□□ 0.03
SCAF11-204ENST00000395454 IPMKQ8NFU5 416 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms