RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CLEC6AQ6EIG7 209 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 ESRP1Q6NXG1 681 aaKnown RBP22.55■■□□□ 1.2
TRIM28-202ENST00000341753 Q6ZNX1 250 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 GFM2Q969S9 779 aaKnown RBP22.55■■□□□ 1.2
TRIM28-202ENST00000341753 PHF21BQ96EK2 531 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 DNAI2Q9GZS0 605 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 PAIP1Q9H074 479 aaKnown RBP22.55■■□□□ 1.2
TRIM28-202ENST00000341753 NXF3Q9H4D5 531 aaKnown RBP22.55■■□□□ 1.2
TRIM28-202ENST00000341753 SPON1Q9HCB6 807 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 CD300AQ9UGN4 299 aa22.55■■□□□ 1.2
TRIM28-202ENST00000341753 BMP10O95393 424 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 NPY2RP49146 381 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 XKR5Q6UX68 686 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 HM13Q8TCT9 377 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 MUC3BQ9H195 1237 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 MRPL46Q9H2W6 279 aaKnown RBP22.54■■□□□ 1.2
TRIM28-202ENST00000341753 GOLGA2P5Q9HBQ8 144 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 CROTQ9UKG9 612 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 SRP72O76094 671 aaKnown RBP22.54■■□□□ 1.2
TRIM28-202ENST00000341753 MT-CYBP00156 380 aaPredicted RBP22.54■■□□□ 1.2
TRIM28-202ENST00000341753 SNRPB2P08579 225 aaKnown RBP22.54■■□□□ 1.2
TRIM28-202ENST00000341753 PRKAA2P54646 552 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 TUBA4AP68366 448 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 GPR107Q5VW38 600 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 OFCC1Q8IZS5 231 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 NPY6RQ99463 290 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 NAA50Q9GZZ1 169 aaKnown RBP22.54■■□□□ 1.2
TRIM28-202ENST00000341753 SNX25Q9H3E2 840 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 SH3GLB1Q9Y371 365 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 SHROOM3Q8TF72 1996 aa22.54■■□□□ 1.2
TRIM28-202ENST00000341753 NOS2P35228 1153 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 PRPSAP1Q14558 356 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 IFNLR1Q8IU57 520 aaPredicted RBP22.53■■□□□ 1.2
TRIM28-202ENST00000341753 OR6J1Q8NGC5 347 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 FBXL20Q96IG2 436 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 RPL10LQ96L21 214 aaKnown RBP22.53■■□□□ 1.2
TRIM28-202ENST00000341753 EFHD1Q9BUP0 239 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 A0A1W2PPW3 197 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 DLGAP1O14490 977 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 GIPC1O14908 333 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 MMP3P08254 477 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 CD247P20963 164 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 ACADSBP45954 432 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 YBX1P67809 324 aaKnown RBP22.53■■□□□ 1.2
TRIM28-202ENST00000341753 CDH17Q12864 832 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 SQLEQ14534 574 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 DHRS4L2Q6PKH6 230 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 CHST15Q7LFX5 561 aaPredicted RBP22.53■■□□□ 1.2
TRIM28-202ENST00000341753 UNC93AQ86WB7 457 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 SPPL2CQ8IUH8 684 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 EPHX4Q8IUS5 362 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 CYGBQ8WWM9 190 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 SLC45A3Q96JT2 553 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 GIMAP2Q9UG22 337 aa22.53■■□□□ 1.2
TRIM28-202ENST00000341753 CCL15-CCL14A0A0B4J2E2 113 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 MAGEB16A2A368 324 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 DAB1O75553 588 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 ADRA1BP35368 520 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 SLC1A2P43004 574 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 CCL15Q16663 113 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 MAP7D1Q3KQU3 841 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 SLC44A4Q53GD3 710 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 TBCELQ5QJ74 424 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 C9orf57Q5W0N0 161 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 PPP4R4Q6NUP7 873 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 CATSPER4Q7RTX7 472 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 SHCBP1Q8NEM2 672 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 SOX17Q9H6I2 414 aaPredicted RBP22.52■■□□□ 1.2
TRIM28-202ENST00000341753 VTA1Q9NP79 307 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 A0A087WXM4 84 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 NRP2O60462 931 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 FAM163BP0C2L3 166 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 FUT4P22083 530 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 MAGEA8P43361 318 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 PSMD8P48556 350 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 PMS2P3Q13401 168 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 ZBED5Q49AG3 693 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 LDLRAD1Q5T700 205 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 CUZD1Q86UP6 607 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 IPMKQ8NFU5 416 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 WNT8BQ93098 351 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 THAP11Q96EK4 314 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 TCF12Q99081 682 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 ATXN3LQ9H3M9 355 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 TMEM181Q9P2C4 612 aa22.52■■□□□ 1.2
TRIM28-202ENST00000341753 NPHS1O60500 1241 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 HADHAP40939 763 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 GRM5P41594 1212 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 TRAP1Q12931 704 aaKnown RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 FRG1Q14331 258 aaKnown RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 RBM20Q5T481 1227 aaKnown RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 TMEM26Q6ZUK4 368 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 PIWIL4Q7Z3Z4 852 aaKnown RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 CROCCP3Q8IVE0 287 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 OR2T34Q8NGX1 318 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 OR2T3Q8NH03 318 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 BRI3BPQ8WY22 251 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 HSFY1Q96LI6 401 aa22.51■■□□□ 1.19
TRIM28-202ENST00000341753 UHRF1Q96T88 793 aaPredicted RBP22.51■■□□□ 1.19
TRIM28-202ENST00000341753 CXorf21Q9HAI6 301 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms