RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SPECC1L-ADORA2AF8WAN1 911 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 POP4O95707 220 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 FMO4P31512 558 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 RPA3P35244 121 aaPredicted RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 WASHC5Q12768 1159 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 OVGP1Q12889 678 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ADGRD1Q6QNK2 874 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 DCAF4L2Q8NA75 395 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 OR4K2Q8NGD2 314 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 CFAP61Q8NHU2 1237 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 WFIKKN2Q8TEU8 576 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ATXN2LQ8WWM7 1075 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 C17orf80Q9BSJ5 609 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ZCCHC2Q9C0B9 1178 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 CYP4F12Q9HCS2 524 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 MTMR10Q9NXD2 777 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 FETUBQ9UGM5 382 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 SUN2Q9UH99 717 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ZNF180Q9UJW8 692 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 PLXNA1Q9UIW2 1896 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 A0A1W2PPM1 405 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 H3BMM5 538 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TRIM13O60858 407 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 RPP40O75818 363 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 IL1BP01584 269 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TPBGLP0DKB5 382 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ATF6P18850 670 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 MSH3P20585 1137 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 IL4RP24394 825 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 HMOX2P30519 316 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TSTD2Q5T7W7 516 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 FAM45BPQ6NSW5 357 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 CACUL1Q86Y37 369 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 FAM45AQ8TCE6 357 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 OTUB2Q96DC9 234 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TTLL2Q9BWV7 592 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 SPATA16Q9BXB7 569 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 NCKIPSDQ9NZQ3 722 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TBC1D30Q9Y2I9 924 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 A0A087X1B8 175 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TNFRSF10BO14763 440 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 CD3EAPO15446 510 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 FYNP06241 537 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ITGA9Q13797 1035 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ESRP1Q6NXG1 681 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ARHGAP36Q6ZRI8 547 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 OTOAQ7RTW8 1153 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 RAB42Q8N4Z0 105 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 NPWQ8N729 165 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 BPIFB1Q8TDL5 484 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TRMT2BQ96GJ1 504 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 PANX3Q96QZ0 392 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 SMG9Q9H0W8 520 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 RASSF4Q9H2L5 321 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 CWH43Q9H720 699 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 WNT6Q9Y6F9 365 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 KDELR3O43731 214 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 APODP05090 189 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 SERPINE1P05121 402 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 KDSRQ06136 332 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ART3Q13508 389 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 PTPRNQ16849 979 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TTC31Q49AM3 519 aaPredicted RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TMEM240Q5SV17 173 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ATXN7L2Q5T6C5 722 aaPredicted RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 FAM46CQ5VWP2 391 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 C16orf46Q6P387 395 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TRMT10BQ6PF06 316 aaKnown RBP11.67□□□□□ -0.54
VPS4A-201ENST00000254950 KIAA0408Q6ZU52 694 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 SLC41A1Q8IVJ1 513 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 PPFIBP2Q8ND30 876 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 NT5C3BQ969T7 300 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 SH3KBP1Q96B97 665 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 ZFYVE1Q9HBF4 777 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 LZTS1Q9Y250 596 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 TEX264Q9Y6I9 313 aa11.67□□□□□ -0.54
VPS4A-201ENST00000254950 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 ASLP04424 464 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 OR56A5P0C7T3 313 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 ACADMP11310 421 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 IVDP26440 423 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 NMBRP28336 390 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 PRKAA2P54646 552 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 MRPL58Q14197 206 aaKnown RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 TAZQ16635 292 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 POM121L1PQ3SYA9 428 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 SNX30Q5VWJ9 437 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 SLC22A9Q8IVM8 553 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 ZSCAN18Q8TBC5 510 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 BRSK1Q8TDC3 778 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 CKAP2Q8WWK9 683 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 TBATAQ96M53 351 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 UNKQ9C0B0 810 aaKnown RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 SFXN1Q9H9B4 322 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 CLDND1Q9NY35 253 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 WWOXQ9NZC7 414 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 FAM50BQ9Y247 325 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 B4GALT3O60512 393 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 TCEA3O75764 348 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 ITGB6P18564 788 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms