RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SELENOMQ8WWX9 145 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CELF6Q96J87 481 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ADAM7Q9H2U9 754 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SDHAF3Q9NRP4 125 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 COMMD9Q9P000 198 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 GMIPQ9P107 970 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SLC35G6P0C7Q6 338 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ANPEPP15144 967 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CASP1P29466 404 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ARRB1P49407 418 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 MECP2P51608 486 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 GALNT3Q14435 633 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 TARBP2Q15633 366 aaKnown RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 CHST9Q7L1S5 443 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 SPATA21Q7Z572 469 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ANKS1BQ7Z6G8 1248 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 NPAS4Q8IUM7 802 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 AGGF1Q8N302 714 aaeCLIP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 GALNT4Q8N4A0 578 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF483Q8TF39 744 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-217ENST00000637988 ATP6V1G3Q96LB4 118 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 DNAJC28Q9NX36 388 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 AP4S1Q9Y587 144 aa6.18□□□□□ -1.42
SCN1A-217ENST00000637988 GRIN2DO15399 1336 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 ALDH4A1P30038 563 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PRKG2Q13237 762 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 VITQ6UXI7 678 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 CATSPERGQ6ZRH7 1159 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 EIF3MQ7L2H7 374 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF527Q8NB42 609 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 ATP6V1C2Q8NEY4 427 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TRMT61BQ9BVS5 477 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 IL22Q9GZX6 179 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 GPRC5CQ9NQ84 441 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SERINC1Q9NRX5 453 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 RPS6KA6Q9UK32 745 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SLC27A5Q9Y2P5 690 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 MADDQ8WXG6 1647 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 CSDE1O75534 798 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 OGNP20774 298 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 IRF8Q02556 426 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 GHRHRQ02643 423 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 LRRC14Q15048 493 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 NKAPQ8N5F7 415 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 FIG4Q92562 907 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PNPLA2Q96AD5 504 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 DPYSL5Q9BPU6 564 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PARD6BQ9BYG5 372 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 MYH2Q9UKX2 1941 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TEX46H3BTG2 121 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 IRF6O14896 467 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 IL33O95760 270 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 AP1S2P56377 157 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SLC30A10Q6XR72 485 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 RBFAQ8N0V3 343 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SVOPQ8N4V2 548 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 ETNPPLQ8TBG4 499 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 KLHL6Q8WZ60 621 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 USP6NLQ92738 828 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 CHMP1AQ9HD42 196 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 POU2F3Q9UKI9 436 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PSMD13Q9UNM6 376 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PRKAB1Q9Y478 270 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 CEMIPQ8WUJ3 1361 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 EFCAB10A6NFE3 127 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 KHDRBS3O75525 346 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM253P0C7T8 217 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 NME5P56597 212 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 MYBPC3Q14896 1274 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 RAB39AQ14964 217 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PTPN21Q16825 1174 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 MZT2AQ6P582 158 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 INTS5Q6P9B9 1019 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 CCDC80Q76M96 950 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SLC13A5Q86YT5 568 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SCUBE3Q8IX30 993 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 DAGLBQ8NCG7 672 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 RHOBTB2Q9BYZ6 727 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 INVSQ9Y283 1065 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 USP31Q70CQ4 1352 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 A0A1W2PQJ5 194 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TTC26A0AVF1 554 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TRIM43BA6NCK2 446 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 ATMINO43313 823 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 AKAP8O43823 692 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 DUSP11O75319 330 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 LGR5O75473 907 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 CCL5P13501 91 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PTPRAP18433 802 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 CD86P42081 329 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 RPL19P84098 196 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SLC6A3Q01959 620 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TAB1Q15750 504 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PLA2G4EQ3MJ16 856 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 HECTD2Q5U5R9 776 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 RAP1GAP2Q684P5 730 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 RNF43Q68DV7 783 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 UNQ6126/PRO20091Q6UXV3 157 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 AP2M1Q96CW1 435 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM121Q9BTD3 319 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms