RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 APOPT1Q96IL0 206 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 CDK5RAP1Q96SZ6 601 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 LRRC3Q9BY71 257 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 TM6SF2Q9BZW4 377 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PDFQ9HBH1 243 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 MAN1C1Q9NR34 630 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SENP1Q9P0U3 644 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PHTF1Q9UMS5 762 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 FAM237BA0A1B0GVD1 139 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 TRIM24O15164 1050 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 PHGDHO43175 533 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 CD160O95971 181 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 CSKP41240 450 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 ARSDP51689 593 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 CLCN4P51793 760 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 NEK3P51956 506 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 ARF5P84085 180 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SEMG2Q02383 582 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SLC18A2Q05940 514 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 TEAD2Q15562 447 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 LGSNQ5TDP6 509 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 ITIH5Q86UX2 942 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 CACNA2D3Q8IZS8 1091 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 LRRC8CQ8TDW0 803 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 ZSWIM3Q96MP5 696 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 LINC00597Q9H2U6 94 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.88□□□□□ -1.15
NEK3-207ENST00000617054 DNMT3BQ9UBC3 853 aaKnown RBP7.88□□□□□ -1.15
NEK3-207ENST00000617054 DCTN4Q9UJW0 460 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 ZNF180Q9UJW8 692 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 VPS28Q9UK41 221 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 SLC39A10Q9ULF5 831 aa7.88□□□□□ -1.15
NEK3-207ENST00000617054 MIA3Q5JRA6 1907 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 A8MX80 341 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 SMAD6O43541 496 aaKnown RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 SNX3O60493 162 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 CLDN11O75508 207 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 HAUS5O94927 633 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 KITP10721 976 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 WEE1P30291 646 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 ETV4P43268 484 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 MAPKAPK2P49137 400 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 CDH18Q13634 790 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 GRM3Q14832 879 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 CYTH1Q15438 398 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 PPM1LQ5SGD2 360 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 MARK2Q7KZI7 788 aaKnown RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 PIGWQ7Z7B1 504 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 CMTM8Q8IZV2 173 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 TEX26Q8N6G2 289 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 OTUD6BQ8N6M0 293 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 OR13C4Q8NGS5 318 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 OR6P1Q8NGX9 317 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 SH3RF2Q8TEC5 729 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 IFT43Q96FT9 208 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 NDNQ99608 321 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 KIFC1Q9BW19 673 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 CINPQ9BW66 212 aaPredicted RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 C20orf27Q9GZN8 174 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 POLR1EQ9GZS1 481 aaKnown RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 CCDC134Q9H6E4 229 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 PPCSQ9HAB8 311 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 FBXO6Q9NRD1 293 aaPredicted RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 UBA2Q9UBT2 640 aaPredicted RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 PLLPQ9Y342 182 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 NOTCH4Q99466 2003 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 A0A1B0GVM2 712 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 TCAF2A6NFQ2 919 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 ZWINTO95229 277 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 GLRBP48167 497 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 ARCN1P48444 511 aaKnown RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 SERPINH1P50454 418 aaKnown RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 YBEYP58557 167 aaPredicted RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 MPP3Q13368 585 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 NR6A1Q15406 480 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 PDK4Q16654 411 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 PABPC1LQ4VXU2 614 aaKnown RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 GPR158Q5T848 1215 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 PPP2R2DQ66LE6 453 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 ZNF470Q6ECI4 717 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 GRASPQ7Z6J2 395 aaPredicted RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 ADGRD2Q7Z7M1 963 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 MFSD6LQ8IWD5 586 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 PPHLN1Q8NEY8 458 aaKnown RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 HDAC10Q969S8 669 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 RMDN1Q96DB5 314 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 RMDN2Q96LZ7 410 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 FEM1AQ9BSK4 669 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 NAT9Q9BTE0 207 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 MANSC1Q9H8J5 431 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 ASAH2Q9NR71 780 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 SNX15Q9NRS6 342 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 ABCF3Q9NUQ8 709 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 TMEM216Q9P0N5 145 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 CPSF2Q9P2I0 782 aaKnown RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 HSFX1Q9UBD0 423 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 MARCOQ9UEW3 520 aaPredicted RBP7.87□□□□□ -1.15
NEK3-207ENST00000617054 SH3BP1Q9Y3L3 701 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 TCAF1Q9Y4C2 921 aa7.87□□□□□ -1.15
NEK3-207ENST00000617054 LEFTY2O00292 366 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms