RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CDH22Q9UJ99 828 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 ARHGAP26Q9UNA1 814 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 LRCH1Q9Y2L9 728 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 PRG3Q9Y2Y8 225 aaPredicted RBP10.18□□□□□ -0.78
VPS53-220ENST00000576149 PCDHB5Q9Y5E4 795 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 COMMD10Q9Y6G5 202 aa10.18□□□□□ -0.78
VPS53-220ENST00000576149 GOLGA8QA0A0J9YX86 632 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 FAM92AA1XBS5 289 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 GOLGA8OA6NCC3 632 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 GOLGA8NF8WBI6 632 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 AURKAO14965 403 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 SMNDC1O75940 238 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS53-220ENST00000576149 CNTN5O94779 1100 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 HAPLN1P10915 354 aaPredicted RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 ELNP15502 786 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 MAGEA11P43364 429 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 SERPINH1P50454 418 aaKnown RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 CAP1Q01518 475 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 TNK2Q07912 1038 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 SLC10A7Q0GE19 358 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 ASPHQ12797 758 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 MSLNQ13421 630 aaPredicted RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 CUL3Q13618 768 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 LSM12Q3MHD2 195 aaKnown RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 ALFQ53S48 1182 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 TSTD2Q5T7W7 516 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 MARC1Q5VT66 337 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 ADGRG6Q86SQ4 1221 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 DEFB107AQ8IZN7 70 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 SPATA6LQ8N4H0 392 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 CALML6Q8TD86 181 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 OMDQ99983 421 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 MRPL57Q9BQC6 102 aaKnown RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 CYP4F11Q9HBI6 524 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 SSX2IPQ9Y2D8 614 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 MYLKQ15746 1914 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 MYO16Q9Y6X6 1858 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 TTC3P53804 2025 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 SYN3O14994 580 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 SLC22A2O15244 555 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 NPHS1O60500 1241 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 TADA2AO75478 443 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 ZMPSTE24O75844 475 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 PAPSS2O95340 614 aaPredicted RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 MMP2P08253 660 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 CPB1P15086 417 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 EPHA3P29320 983 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 CD86P42081 329 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 LEPRP48357 1165 aaKnown RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 ERFP50548 548 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 ACLYP53396 1101 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 EPHB1P54762 984 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 SLC12A2P55011 1212 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 MAXP61244 160 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 EFEMP1Q12805 493 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 PEX6Q13608 980 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 PSMD5Q16401 504 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 C4orf46Q504U0 113 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 CNSTQ6PJW8 725 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 CPSF7Q8N684 471 aaKnown RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 TEX26Q8N6G2 289 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 ATP6V0D2Q8N8Y2 350 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 HEXDCQ8WVB3 486 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 BTN2A3PQ96KV6 586 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 KLHL5Q96PQ7 755 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 ZNF184Q99676 751 aaPredicted RBP10.17□□□□□ -0.78
VPS53-220ENST00000576149 OSBPL1AQ9BXW6 950 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 NUF2Q9BZD4 464 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 S100A14Q9HCY8 104 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 NDE1Q9NXR1 346 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 CLIC5Q9NZA1 410 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 PPM1HQ9ULR3 514 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 PLXNA3P51805 1871 aa10.17□□□□□ -0.78
VPS53-220ENST00000576149 FRMPD3Q5JV73 1810 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 A6NHS1 94 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 NEMP1O14524 444 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 PDE5AO76074 875 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 SORBS2O94875 1100 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 TBX18O95935 607 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 THRAP10827 490 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 YWHAQP27348 245 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 PIK3R1P27986 724 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 SERPINB5P36952 375 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 KPNA2P52292 529 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 DNAJB13P59910 316 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 KLC1Q07866 573 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 ITKQ08881 620 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 NSUN2Q08J23 767 aaKnown RBP eCLIP10.16□□□□□ -0.78
VPS53-220ENST00000576149 IHHQ14623 411 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 TRIP4Q15650 581 aaPredicted RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 ZNF789Q5FWF6 425 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 RBM20Q5T481 1227 aaKnown RBP10.16□□□□□ -0.78
VPS53-220ENST00000576149 ACAD11Q709F0 780 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 RNF180Q86T96 592 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 KBTBD2Q8IY47 623 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 FBXW8Q8N3Y1 598 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 TTC9BQ8N6N2 239 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 ATAD1Q8NBU5 361 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 IGSF8Q969P0 613 aa10.16□□□□□ -0.78
VPS53-220ENST00000576149 PSMG2Q969U7 264 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms