RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SNX10Q9Y5X0 201 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 HIVEP3Q5T1R4 2406 aa7.43□□□□□ -1.22
VPS4A-203ENST00000564399 ANKRD36A6QL64 1941 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 LRP4O75096 1905 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 TMEM110-MUSTN1A8MSY1 372 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ZNF891A8MT65 544 aaPredicted RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 KRIT1O00522 736 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 TOR1BO14657 336 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 THAP12O43422 761 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 HSF2BPO75031 334 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ZNF821O75541 412 aaPredicted RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 AGFG2O95081 481 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 F13A1P00488 732 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 UGT2B4P06133 528 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 GLI1P08151 1106 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ZSCAN22P10073 491 aaPredicted RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 CCL4P13236 92 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 GLB1P16278 677 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 SRP54P61011 504 aaKnown RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 FKBP3Q00688 224 aaKnown RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 DNM1Q05193 864 aaKnown RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 PDCLQ13371 301 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 C16orf72Q14CZ0 275 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ALG11Q2TAA5 492 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 KLHL40Q2TBA0 621 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 AMZ1Q400G9 498 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ZNF805Q5CZA5 627 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 LRRC73Q5JTD7 316 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ATL3Q6DD88 541 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 SPRED1Q7Z699 444 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 TAF8Q7Z7C8 310 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 TTC7BQ86TV6 843 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 PIM3Q86V86 326 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 SLITRK4Q8IW52 837 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ARHGEF19Q8IW93 802 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 FAM46DQ8NEK8 389 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ZNF606Q8WXB4 792 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 NKD1Q969G9 470 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 KLHL32Q96NJ5 620 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 CATSPER2Q96P56 530 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 SLC2A13Q96QE2 648 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 EPAS1Q99814 870 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 GTPBP4Q9BZE4 634 aaKnown RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 B3GNT4Q9C0J1 378 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 TKTL2Q9H0I9 626 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 SEMA6CQ9H3T2 930 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 WDCPQ9H6R7 721 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 MBNL1Q9NR56 388 aaKnown RBP7.42□□□□□ -1.22
VPS4A-203ENST00000564399 LRIT1Q9P2V4 623 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 KLQ9UEF7 1012 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 APPL1Q9UKG1 709 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 POLQO75417 2590 aa7.42□□□□□ -1.22
VPS4A-203ENST00000564399 ILVBLA1L0T0 632 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 MTSS1O43312 755 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 SRGAP2O75044 1071 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 KRT38O76015 456 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 POP4O95707 220 aaKnown RBP7.41□□□□□ -1.22
VPS4A-203ENST00000564399 TNFP01375 233 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 PRKAR1AP10644 381 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 LIFP15018 202 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 XPAP23025 273 aaPredicted RBP7.41□□□□□ -1.22
VPS4A-203ENST00000564399 UGT1A3P35503 534 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 PRCPP42785 496 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 PEX5P50542 639 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 GCNT1Q02742 428 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 LRRC14Q15048 493 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 POLD3Q15054 466 aaPredicted RBP7.41□□□□□ -1.22
VPS4A-203ENST00000564399 IRF4Q15306 451 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 MEA1Q16626 185 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 CCDC40Q4G0X9 1142 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 CERCAMQ5T4B2 595 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 ANKRD40Q6AI12 368 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 TMPRSS9Q7Z410 1059 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 DRC7Q8IY82 874 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 CACNA2D3Q8IZS8 1091 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 TP53I13Q8NBR0 393 aaPredicted RBP7.41□□□□□ -1.22
VPS4A-203ENST00000564399 RCBTB1Q8NDN9 531 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 GPR156Q8NFN8 814 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 ATL2Q8NHH9 583 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 SPATA20Q8TB22 786 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 GPBAR1Q8TDU6 330 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 MIB2Q96AX9 1013 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 ABHD17AQ96GS6 310 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 TAAR9Q96RI9 348 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 WRAP53Q9BUR4 548 aaKnown RBP7.41□□□□□ -1.22
VPS4A-203ENST00000564399 DPEP2Q9H4A9 486 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 RDH14Q9HBH5 336 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 TMPRSS4Q9NRS4 437 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 PIGVQ9NUD9 493 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 ASNSD1Q9NWL6 643 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 HPSEQ9Y251 543 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 ACTL7AQ9Y615 435 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 RELNP78509 3460 aa7.41□□□□□ -1.22
VPS4A-203ENST00000564399 TRIM49BA6NDI0 452 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 DRGXA6NNA5 263 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 B4DGG1 531 aa7.4□□□□□ -1.22
VPS4A-203ENST00000564399 K7ELQ4 463 aaPredicted RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 HGSO14964 777 aaPredicted RBP7.4□□□□□ -1.22
VPS4A-203ENST00000564399 AREL1O15033 823 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms