RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RRM2BQ7LG56 351 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 LURAP1LQ8IV03 231 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 LINC00346Q8IVM7 164 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 SUGP2Q8IX01 1082 aaKnown RBP eCLIP1.73□□□□□ -2.13
USP3-209ENST00000558925 UEVLDQ8IX04 471 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 C16orf71Q8IYS4 520 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 ADGRF4Q8IZF3 695 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CADM3Q8N126 398 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 SCML4Q8N228 414 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 LRRC57Q8N9N7 239 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 C8orf58Q8NAV2 365 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 OR4N2Q8NGD1 307 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 OSR1Q8TAX0 266 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 CAGE1Q8TC20 777 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 WIPF2Q8TF74 440 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 SCFD2Q8WU76 684 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 PSPC1Q8WXF1 523 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 KAT2BQ92831 832 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ZKSCAN4Q969J2 545 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 MMABQ96EY8 250 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 ELMOD3Q96FG2 381 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 C1orf74Q96LT6 269 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CMTM3Q96MX0 182 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ASB2Q96Q27 587 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 TEFMQ96QE5 360 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 FRG2BQ96QU4 278 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 BBS4Q96RK4 519 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 TIMP4Q99727 224 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 SLF1Q9BQI6 1058 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 LHPPQ9H008 270 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 SYNCQ9H7C4 482 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 KIF9Q9HAQ2 790 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 FBRSL1Q9HCM7 1045 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 WDR6Q9NNW5 1121 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 HCFC1R1Q9NWW0 138 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 PLK2Q9NYY3 685 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 GRHL1Q9NZI5 618 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 ABI3Q9P2A4 366 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 SLC17A6Q9P2U8 582 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 NFKBIL1Q9UBC1 381 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 CNOT8Q9UFF9 292 aaKnown RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 CHORDC1Q9UHD1 332 aaPredicted RBP1.73□□□□□ -2.13
USP3-209ENST00000558925 A4GNTQ9UNA3 340 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 PCDHGB5Q9Y5G0 923 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CLDN16Q9Y5I7 305 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 LYVE1Q9Y5Y7 322 aa1.73□□□□□ -2.13
USP3-209ENST00000558925 CNTNAP2Q9UHC6 1331 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 A0A0G2JK05 382 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 MANSC4A6NHS7 340 aaPredicted RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 TSPY2A6NKD2 308 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 A6NNC1 897 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 FOXO6A8MYZ6 492 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 A8MZ25 164 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 MYO1GB0I1T2 1018 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 FAM157AC9JC47 383 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ADAM10O14672 748 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 BCAT2O15382 392 aaPredicted RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 PLOD3O60568 738 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 UGDHO60701 494 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ATP2C2O75185 946 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ENTPD3O75355 529 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 RNF8O76064 485 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 TMCC1O94876 653 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 NKX2-2O95096 273 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CLDN7O95471 211 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 HLA-DQA2P01906 255 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 TFP02787 698 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CHRM5P08912 532 aaPredicted RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 TSPY3P0CV98 308 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 TSPY8P0CW00 308 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CYP19A1P11511 503 aaPredicted RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 KRT10P13645 584 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 SLC2A4P14672 509 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CTPS1P17812 591 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 GABRB1P18505 474 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 TFEBP19484 476 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CHRNA5P30532 468 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CIITAP33076 1130 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ARHGAP25P42331 645 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 BLKP51451 505 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CDH8P55286 799 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 TUBA4AP68366 448 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 TSPY1Q01534 308 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 PMPCAQ10713 525 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 LRMPQ12912 555 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CSTF3Q12996 717 aaKnown RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 LAMB3Q13751 1172 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CAPSQ13938 189 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 RUNX2Q13950 521 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ZNF268Q14587 947 aaPredicted RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 DPCR1Q3MIW9 517 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CERKLQ49MI3 558 aaPredicted RBP1.72□□□□□ -2.13
USP3-209ENST00000558925 MIDNQ504T8 468 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 BMP2KLQ5H9B9 411 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CEP78Q5JTW2 689 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 MFSD4BQ5TF39 518 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 ATG9BQ674R7 924 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 FCRLBQ6BAA4 426 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 CES5AQ6NT32 575 aa1.72□□□□□ -2.13
USP3-209ENST00000558925 HMBOX1Q6NT76 420 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms