RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 FTLP02792 175 aaPredicted RBP11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 GKP32189 559 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 ABL2P42684 1182 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 PEX5P50542 639 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 BLKP51451 505 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 PFN3P60673 137 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 POLR2LP62875 67 aaKnown RBP11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 NSUN2Q08J23 767 aaKnown RBP eCLIP11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 KLHL30Q0D2K2 578 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 TARDBPQ13148 414 aaKnown RBP eCLIP11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 PDE1CQ14123 709 aaPredicted RBP11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 FZD2Q14332 565 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 RTP5Q14D33 572 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 TMEM52BQ4KMG9 183 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 FIGNQ5HY92 759 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 CFAP58Q5T655 872 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 ATXN7L2Q5T6C5 722 aaPredicted RBP11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 TMCO4Q5TGY1 634 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZCCHC8Q6NZY4 707 aaKnown RBP11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 BRAT1Q6PJG6 821 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 LEKR1Q6ZMV7 388 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 VPS36Q86VN1 386 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 SDR16C5Q8N3Y7 309 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 DCBLD1Q8N8Z6 715 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 ATL2Q8NHH9 583 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 TPCN2Q8NHX9 752 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 GRAMD1AQ96CP6 724 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 ABCG4Q9H172 646 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 SUV39H2Q9H5I1 410 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 LRRC19Q9H756 370 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZWILCHQ9H900 591 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 SALL4Q9UJQ4 1053 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 AP4E1Q9UPM8 1137 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 RAXQ9Y2V3 346 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 AK5Q9Y6K8 562 aa11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 ANKRD11Q6UB99 2663 aaPredicted RBP11.01□□□□□ -0.65
VTI1BP3-201ENST00000550220 A0A087WV48 116 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 A0A1W2PQ67 120 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 TSPAN11A1L157 253 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 K7ESM1 405 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 RAD51BO15315 384 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 FFAR2O15552 330 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 PALMO75781 387 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 MT-CO3P00414 261 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 TIMP2P16035 220 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 JUNDP17535 347 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 NFKBIAP25963 317 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 HTR1BP28222 390 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 PCK1P35558 622 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 RPIAP49247 311 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 RENBPP51606 427 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 OGDHQ02218 1023 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 NR1I3Q14994 352 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 CYTH1Q15438 398 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 UGP2Q16851 508 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 BOLA3Q53S33 107 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 CAVIN1Q6NZI2 390 aaKnown RBP11□□□□□ -0.65
VTI1BP3-201ENST00000550220 RFX8Q6ZV50 586 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZNF571Q7Z3V5 609 aaPredicted RBP11□□□□□ -0.65
VTI1BP3-201ENST00000550220 LSMEM2Q8N112 164 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZNF548Q8NEK5 533 aaPredicted RBP11□□□□□ -0.65
VTI1BP3-201ENST00000550220 SCG3Q8WXD2 468 aaKnown RBP11□□□□□ -0.65
VTI1BP3-201ENST00000550220 SYN2Q92777 582 aaPredicted RBP11□□□□□ -0.65
VTI1BP3-201ENST00000550220 APOLD1Q96LR9 279 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 IL12RB2Q99665 862 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 SLC13A1Q9BZW2 595 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 DHX35Q9H5Z1 703 aaKnown RBP11□□□□□ -0.65
VTI1BP3-201ENST00000550220 UCKL1Q9NWZ5 548 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 TAS2R14Q9NYV8 317 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 CNOT8Q9UFF9 292 aaKnown RBP11□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZFHX4Q86UP3 3567 aa11□□□□□ -0.65
VTI1BP3-201ENST00000550220 RRP8O43159 456 aaKnown RBP10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 AQP9O43315 295 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 MMP20O60882 483 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 SERPINA4P29622 427 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 MIPP30301 263 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 ACTN2P35609 894 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 PAPOLAP51003 745 aaKnown RBP10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 INSM1Q01101 510 aaPredicted RBP10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 PPARDQ03181 441 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 IL10RBQ08334 325 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 LRRC14Q15048 493 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 AGERQ15109 404 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 LVRNQ6Q4G3 990 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 LRRC69Q6ZNQ3 347 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 BBS5Q8N3I7 341 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 FSTL5Q8N475 847 aaPredicted RBP10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 WDR48Q8TAF3 677 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 VOPP1Q96AW1 172 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZNF653Q96CK0 615 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZNF599Q96NL3 588 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 DEPDC7Q96QD5 511 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 SLC39A8Q9C0K1 460 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 KLC2Q9H0B6 622 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 ISCUQ9H1K1 167 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 ATP13A3Q9H7F0 1226 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 SP110Q9HB58 689 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 PDFQ9HBH1 243 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 LHX3Q9UBR4 397 aa10.99□□□□□ -0.65
VTI1BP3-201ENST00000550220 PCSK1NQ9UHG2 260 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms