RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ZNF211Q13398 564 aaPredicted RBP16.53■□□□□ 0.24
VPS29-207ENST00000549970 PDE1CQ14123 709 aaPredicted RBP16.53■□□□□ 0.24
VPS29-207ENST00000549970 FZD2Q14332 565 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 KLHL40Q2TBA0 621 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 FIGNQ5HY92 759 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 HES3Q5TGS1 186 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 RFX8Q6ZV50 586 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 CYP4V2Q6ZWL3 525 aaPredicted RBP16.53■□□□□ 0.24
VPS29-207ENST00000549970 OR4C6Q8NH72 309 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 CXorf40AQ8TE69 158 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 TRIM11Q96F44 468 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 LENG8Q96PV6 779 aaPredicted RBP16.53■□□□□ 0.24
VPS29-207ENST00000549970 EIF3CQ99613 913 aaKnown RBP16.53■□□□□ 0.24
VPS29-207ENST00000549970 WRAP53Q9BUR4 548 aaKnown RBP16.53■□□□□ 0.24
VPS29-207ENST00000549970 GPR27Q9NS67 375 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 IPO11Q9UI26 975 aaKnown RBP16.53■□□□□ 0.24
VPS29-207ENST00000549970 MFHAS1Q9Y4C4 1052 aa16.53■□□□□ 0.24
VPS29-207ENST00000549970 APC2O95996 2303 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 ANKRD11Q6UB99 2663 aaPredicted RBP16.52■□□□□ 0.24
VPS29-207ENST00000549970 SPTY2D1-AS1A0A0U1RR47 76 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 PRAMEF11O60813 436 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 LRCH4O75427 683 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 MYBL1P10243 752 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 TIMP2P16035 220 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 ERCC2P18074 760 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 XPAP23025 273 aaPredicted RBP16.52■□□□□ 0.24
VPS29-207ENST00000549970 ACP1P24666 158 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 UBASH3AP57075 661 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 HNRNPKP61978 463 aaKnown RBP eCLIP16.52■□□□□ 0.24
VPS29-207ENST00000549970 CYP4F3Q08477 520 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 TPRG1LQ5T0D9 272 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 VPS36Q86VN1 386 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 PARGQ86W56 976 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 PDCD7Q8N8D1 485 aaKnown RBP16.52■□□□□ 0.24
VPS29-207ENST00000549970 DENND6BQ8NEG7 585 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 IFT43Q96FT9 208 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.52■□□□□ 0.24
VPS29-207ENST00000549970 ISCUQ9H1K1 167 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 MRPL47Q9HD33 250 aaKnown RBP16.52■□□□□ 0.24
VPS29-207ENST00000549970 DKK3Q9UBP4 350 aa16.52■□□□□ 0.24
VPS29-207ENST00000549970 DSPP15924 2871 aaKnown RBP16.52■□□□□ 0.23
VPS29-207ENST00000549970 DFFAO00273 331 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 NEBLO76041 1014 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 TM7SF2O76062 418 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 GIMD1P0DJR0 217 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 ALPPL2P10696 532 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 NME1P15531 152 aaKnown RBP16.51■□□□□ 0.23
VPS29-207ENST00000549970 IGFALSP35858 605 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 ILKQ13418 452 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 SMTNL2Q2TAL5 461 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 HGSNATQ68CP4 663 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 ARHGAP36Q6ZRI8 547 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 ARHGAP12Q8IWW6 846 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 NPWQ8N729 165 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 CPLX3Q8WVH0 158 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 ASB12Q8WXK4 309 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 CPEB1Q9BZB8 566 aaKnown RBP16.51■□□□□ 0.23
VPS29-207ENST00000549970 SUV39H2Q9H5I1 410 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 SP110Q9HB58 689 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 RAXQ9Y2V3 346 aa16.51■□□□□ 0.23
VPS29-207ENST00000549970 FAM208BQ5VWN6 2430 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 A0A1W2PQJ5 194 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 NEMP2A6NFY4 417 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 GOLGA6L19H0YKK7 550 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 H3BM21 787 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 PALMO75781 387 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 CSF2P04141 144 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 MYF5P13349 255 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 PBX1P40424 430 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 RGRP47804 291 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 PFN3P60673 137 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 TARDBPQ13148 414 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS29-207ENST00000549970 GRM3Q14832 879 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 CFAP58Q5T655 872 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 PSTKQ8IV42 348 aaKnown RBP16.5■□□□□ 0.23
VPS29-207ENST00000549970 TSEN2Q8NCE0 465 aaKnown RBP16.5■□□□□ 0.23
VPS29-207ENST00000549970 ZNF548Q8NEK5 533 aaPredicted RBP16.5■□□□□ 0.23
VPS29-207ENST00000549970 CENPTQ96BT3 561 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 APOLD1Q96LR9 279 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 C1QTNF7Q9BXJ2 289 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 ZWILCHQ9H900 591 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 NLGN3Q9NZ94 848 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 CWC15Q9P013 229 aaKnown RBP16.5■□□□□ 0.23
VPS29-207ENST00000549970 DKK4Q9UBT3 224 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 KLF15Q9UIH9 416 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 COQ6Q9Y2Z9 468 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 MYLKQ15746 1914 aa16.5■□□□□ 0.23
VPS29-207ENST00000549970 K7ESM1 405 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 SCAMP1O15126 338 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 BUB1BO60566 1050 aaPredicted RBP16.49■□□□□ 0.23
VPS29-207ENST00000549970 PRKCGP05129 697 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 TCF4P15884 667 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 JUNDP17535 347 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 IL1R2P27930 398 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 PCK1P35558 622 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 THOP1P52888 689 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 INSM1Q01101 510 aaPredicted RBP16.49■□□□□ 0.23
VPS29-207ENST00000549970 ELP6Q0PNE2 266 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 DPYSQ14117 519 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 UGP2Q16851 508 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms