RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 RIMS3Q9UJD0 308 aa12.65□□□□□ -0.38
RNF4-222ENST00000541204 APPL1Q9UKG1 709 aa12.65□□□□□ -0.38
RNF4-222ENST00000541204 DSEQ9UL01 958 aa12.65□□□□□ -0.38
RNF4-222ENST00000541204 RUVBL2Q9Y230 463 aaKnown RBP12.65□□□□□ -0.38
RNF4-222ENST00000541204 LZTS1Q9Y250 596 aa12.65□□□□□ -0.38
RNF4-222ENST00000541204 AP4B1Q9Y6B7 739 aa12.65□□□□□ -0.38
RNF4-222ENST00000541204 MYOCOSA0A1B0GUC4 107 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TFAP2AP05549 437 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 HCAR3P49019 387 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 CSE1LP55060 971 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 ADGRE1Q14246 886 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ZNF460Q14592 562 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 USP10Q14694 798 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 SLC5A9Q2M3M2 681 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TRIM71Q2Q1W2 868 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 ZNF598Q86UK7 904 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 SPATA6LQ8N4H0 392 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 PCSK9Q8NBP7 692 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 PRICKLE1Q96MT3 831 aaPredicted RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 WDR41Q9HAD4 459 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 RRN3Q9NYV6 651 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 HCSTQ9UBK5 93 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 CDYLQ9Y232 598 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TSC2P49815 1807 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 SHROOM3Q8TF72 1996 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 NCAM2O15394 837 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 IRAK2O43187 625 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 CLPTM1O96005 669 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ATP6V1B1P15313 513 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 PBX3P40426 434 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ARMC3Q5W041 872 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TFAP2DQ7Z6R9 452 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 C14orf80Q86SX3 495 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 RNF180Q86T96 592 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ZC3HC1Q86WB0 502 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 LSMEM2Q8N112 164 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 FSTL5Q8N475 847 aaPredicted RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 GALNT4Q8N4A0 578 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ATPAF2Q8N5M1 289 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ATAD1Q8NBU5 361 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 FAM156AQ8NDB6 213 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 IPMKQ8NFU5 416 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 IRGQQ8WZA9 623 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TEKT5Q96M29 485 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 GPR22Q99680 433 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 NPAS2Q99743 824 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 PKP2Q99959 881 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ZNF385DQ9H6B1 395 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TMEM233B4DJY2 109 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TBX18O95935 607 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 SLC35E2BP0CK96 405 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 SP3Q02447 781 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 PRKAA1Q13131 559 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ART3Q13508 389 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 FRG1Q14331 258 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 POU6F1Q14863 301 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 C6orf52Q5T4I8 152 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 RBM44Q6ZP01 1051 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 SLC41A1Q8IVJ1 513 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 PGAM4Q8N0Y7 254 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 CPSF7Q8N684 471 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 METTL25Q8N6Q8 603 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 LINC01599Q8WXQ3 324 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TMA16Q96EY4 203 aaKnown RBP12.64□□□□□ -0.39
RNF4-222ENST00000541204 MPP4Q96JB8 637 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 GLT1D1Q96MS3 346 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 TSNARE1Q96NA8 513 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 KLHL32Q96NJ5 620 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 OMDQ99983 421 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 SLC39A8Q9C0K1 460 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 IL22Q9GZX6 179 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 Q9H521 79 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 ABCC13Q9NSE7 274 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 MID2Q9UJV3 735 aa12.64□□□□□ -0.39
RNF4-222ENST00000541204 MAGEB16A2A368 324 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 VILLO15195 856 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 PMPCBO75439 489 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 CABYRO75952 493 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 APOA4P06727 396 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 HMBSP08397 361 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 GABRB3P28472 473 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 CCR1P32246 355 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 NPY2RP49146 381 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 GATMP50440 423 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 USP46P62068 366 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 NSUN2Q08J23 767 aaKnown RBP eCLIP12.63□□□□□ -0.39
RNF4-222ENST00000541204 MAPRE1Q15691 268 aaKnown RBP12.63□□□□□ -0.39
RNF4-222ENST00000541204 ITPRIPL1Q6GPH6 555 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 IYDQ6PHW0 289 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 ARHGAP22Q7Z5H3 698 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 CENPLQ8N0S6 344 aaPredicted RBP12.63□□□□□ -0.39
RNF4-222ENST00000541204 DGCR14Q96DF8 476 aaKnown RBP12.63□□□□□ -0.39
RNF4-222ENST00000541204 FAM193BQ96PV7 902 aaPredicted RBP12.63□□□□□ -0.39
RNF4-222ENST00000541204 GRIP2Q9C0E4 1043 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 ZBTB26Q9HCK0 441 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 RAB26Q9ULW5 256 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 SLC27A5Q9Y2P5 690 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 AK5Q9Y6K8 562 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 TNFRSF10BO14763 440 aa12.63□□□□□ -0.39
RNF4-222ENST00000541204 AHSGP02765 367 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms