RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 TRMT1Q9NXH9 659 aaKnown RBP12.12□□□□□ -0.47
SSBP3-214ENST00000533209 PILRBQ9UKJ0 227 aa12.12□□□□□ -0.47
SSBP3-214ENST00000533209 PYCARDQ9ULZ3 195 aa12.12□□□□□ -0.47
SSBP3-214ENST00000533209 ATP8A1Q9Y2Q0 1164 aa12.12□□□□□ -0.47
SSBP3-214ENST00000533209 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.12□□□□□ -0.47
SSBP3-214ENST00000533209 ATXN2Q99700 1313 aaKnown RBP12.11□□□□□ -0.47
SSBP3-214ENST00000533209 GON4LQ3T8J9 2241 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 FAM186AA6NE01 2351 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3DA0A087WVF3 549 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3IA0A087WXS9 549 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3EA0A087X179 549 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3KA0A087X1G2 549 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3FA6NER0 549 aaPredicted RBP12.11□□□□□ -0.47
SSBP3-214ENST00000533209 USP27XA6NNY8 438 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 MEI4A8MW99 385 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3LB9A6J9 549 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TRAFD1O14545 582 aaPredicted RBP12.11□□□□□ -0.47
SSBP3-214ENST00000533209 AP1G1O43747 822 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TJP3O95049 919 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 HLA-DQB2P05538 268 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3HP0C7X1 549 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TIMP2P16035 220 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 SERPINA4P29622 427 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 CCR5P51681 352 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 DSC2Q02487 901 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 BCL2L1Q07817 233 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 KLF1Q13351 362 aaPredicted RBP12.11□□□□□ -0.47
SSBP3-214ENST00000533209 XRCC4Q13426 336 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 IHHQ14623 411 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 CCDC6Q16204 474 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 RALGPS1Q5JS13 557 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 WDR45BQ5MNZ6 344 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 SYCP2LQ5T4T6 812 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 CCDC181Q5TID7 509 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3GQ6DHY5 549 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3CQ6IPX1 549 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 FBXL19Q6PCT2 694 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 SYT12Q8IV01 421 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TBC1D3Q8IZP1 549 aaPredicted RBP12.11□□□□□ -0.47
SSBP3-214ENST00000533209 C1orf216Q8TAB5 229 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 ARRDC2Q8TBH0 407 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 ACTL9Q8TC94 416 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 TFB1MQ8WVM0 346 aaKnown RBP12.11□□□□□ -0.47
SSBP3-214ENST00000533209 ECHDC3Q96DC8 303 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 QKIQ96PU8 341 aaKnown RBP eCLIP12.11□□□□□ -0.47
SSBP3-214ENST00000533209 SEMA3CQ99985 751 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 ORAI3Q9BRQ5 295 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 CEP41Q9BYV8 373 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 POLR1EQ9GZS1 481 aaKnown RBP12.11□□□□□ -0.47
SSBP3-214ENST00000533209 SMOC1Q9H4F8 434 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 PREBQ9HCU5 417 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 PARD6AQ9NPB6 346 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 SCUBE2Q9NQ36 999 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 SEPT10Q9P0V9 454 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 FADS3Q9Y5Q0 445 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 SLCO1B1Q9Y6L6 691 aa12.11□□□□□ -0.47
SSBP3-214ENST00000533209 THADAQ6YHU6 1953 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.1□□□□□ -0.47
SSBP3-214ENST00000533209 TCRBV7S2A1N4TA0A589 114 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 HACD1B0YJ81 288 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 AREL1O15033 823 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 HTRA2O43464 458 aaPredicted RBP12.1□□□□□ -0.47
SSBP3-214ENST00000533209 LATO43561 262 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 LRP3O75074 770 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 NEBLO76041 1014 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 ZNF806P0C7X5 589 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 CES1P23141 567 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 HOXD12P35452 270 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 OTUD4Q01804 1114 aaKnown RBP12.1□□□□□ -0.47
SSBP3-214ENST00000533209 ITKQ08881 620 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 NIPAL4Q0D2K0 466 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 SPEM2Q0P670 501 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 TRAF2Q12933 501 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 LRRC73Q5JTD7 316 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 BRAT1Q6PJG6 821 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 TTC7BQ86TV6 843 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 ALYREFQ86V81 257 aaKnown RBP12.1□□□□□ -0.47
SSBP3-214ENST00000533209 TRIM69Q86WT6 500 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 RGL4Q8IZJ4 473 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 SNX19Q92543 992 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 SPOCK2Q92563 424 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 RAB7BQ96AH8 199 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 FAM118BQ9BPY3 351 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 HINFPQ9BQA5 517 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 CARD9Q9H257 536 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 C10orf88Q9H8K7 445 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 EBF2Q9HAK2 575 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 SEMA4GQ9NTN9 838 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 EIF2B4Q9UI10 523 aaKnown RBP12.1□□□□□ -0.47
SSBP3-214ENST00000533209 GGT7Q9UJ14 662 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 ZFR2Q9UPR6 939 aaKnown RBP12.1□□□□□ -0.47
SSBP3-214ENST00000533209 ITM2BQ9Y287 266 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 TTLL3Q9Y4R7 772 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 PCDHGC4Q9Y5F7 938 aa12.1□□□□□ -0.47
SSBP3-214ENST00000533209 PTPRZ1P23471 2315 aaPredicted RBP12.1□□□□□ -0.47
SSBP3-214ENST00000533209 A0A1W2PPC4 97 aa12.09□□□□□ -0.47
SSBP3-214ENST00000533209 UPK3BL1B0FP48 263 aa12.09□□□□□ -0.47
SSBP3-214ENST00000533209 PATE3B3GLJ2 98 aa12.09□□□□□ -0.47
SSBP3-214ENST00000533209 UPK3BL2E5RIL1 263 aa12.09□□□□□ -0.47
SSBP3-214ENST00000533209 H7C0C1 242 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms