RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 STARD3Q14849 445 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 INAQ16352 499 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 SAMD4BQ5PRF9 694 aaKnown RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 LRRC8DQ7L1W4 858 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 NET1Q7Z628 596 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 CIR1Q86X95 450 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 CLVS1Q8IUQ0 354 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 ZC3H3Q8IXZ2 948 aaKnown RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 DRAXINQ8NBI3 349 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 ESAMQ96AP7 390 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 GATA5Q9BWX5 397 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 ATP11BQ9Y2G3 1177 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 MFHAS1Q9Y4C4 1052 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 PCDHB9Q9Y5E1 797 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 A0A1W2PQH9 124 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 ECHS1P30084 290 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 IL2P60568 153 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 CDC16Q13042 620 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 RNF220Q5VTB9 566 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 GK5Q6ZS86 529 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 NANOGNBQ7Z5D8 188 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 CENPLQ8N0S6 344 aaPredicted RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 FBXO30Q8TB52 745 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 CD101Q93033 1021 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 MED8Q96G25 268 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 SMAD5Q99717 465 aaKnown RBP11.8□□□□□ -0.52
SYNPO-204ENST00000519664 RHOJQ9H4E5 214 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 KANSL3Q9P2N6 904 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 SIX4Q9UIU6 781 aa11.8□□□□□ -0.52
SYNPO-204ENST00000519664 LRRC37A3O60309 1634 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 PMM2O15305 246 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 ATP6V1G1O75348 118 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 CABYRO75952 493 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 STAU1O95793 577 aaKnown RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 MT-ND1P03886 318 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 NTRK1P04629 796 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 PIK3CGP48736 1102 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 SLC7A2P52569 658 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 CLEC6AQ6EIG7 209 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 DRICH1Q6PGQ1 229 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 IGDCC3Q8IVU1 814 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 RMND5BQ96G75 393 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 TBATAQ96M53 351 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 PCDHB8Q9UN66 801 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 C5orf60A6NFR6 353 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 MANSC4A6NHS7 340 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 KPNA6O60684 536 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 WFS1O76024 890 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 SNRPB2P08579 225 aaKnown RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 EPB42P16452 691 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 CDH2P19022 906 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 TAF10Q12962 218 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 NAB1Q13506 487 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 TMEM63BQ5T3F8 832 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 HFE2Q6ZVN8 426 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 BNIPLQ7Z465 357 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 ZDHHC14Q8IZN3 488 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 FBXW8Q8N3Y1 598 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 TOP6BLQ8N6T0 577 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 ATG16L2Q8NAA4 619 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 CDH19Q9H159 772 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 FGF10O15520 208 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 LDLRP01130 860 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 HLA-DPA1P20036 260 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 L1CAMP32004 1257 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 GJA8P48165 433 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 RAB6CQ53S08 254 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 STAG3L4Q8TBR4 150 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 RAB6CQ9H0N0 254 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 ZNF556Q9HAH1 456 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 CAPN10Q9HC96 672 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 TUBA8Q9NY65 449 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 SORCS3Q9UPU3 1222 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 TIMM22Q9Y584 194 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 SMIM35A0A1B0GVV1 85 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 SPATA31D3P0C874 917 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 ZNF7P17097 686 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 LBPP18428 481 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 BFSP2Q13515 415 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 PDK3Q15120 406 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 GPR158Q5T848 1215 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 TMEM198Q66K66 360 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 SPATA31D4Q6ZUB0 917 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 DET1Q7L5Y6 550 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 TAC4Q86UU9 113 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 QKIQ96PU8 341 aaKnown RBP eCLIP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 MRPL57Q9BQC6 102 aaKnown RBP11.79□□□□□ -0.52
SYNPO-204ENST00000519664 ASB8Q9H765 288 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 POLG2Q9UHN1 485 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 NUMA1Q14980 2115 aa11.79□□□□□ -0.52
SYNPO-204ENST00000519664 LZTS3O60299 673 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 TPSB2P20231 275 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 IL5RAQ01344 420 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 NRG1Q02297 640 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-204ENST00000519664 DSC2Q02487 901 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 CDK18Q07002 472 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 TPSAB1Q15661 275 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 ACSBG2Q5FVE4 666 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 NOMO2Q5JPE7 1267 aa11.78□□□□□ -0.52
SYNPO-204ENST00000519664 TDRPQ86YL5 185 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms