RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FIBINQ8TAL6 211 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 BRSK1Q8TDC3 778 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 SLC22A17Q8WUG5 538 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 IRF7Q92985 503 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ABHD8Q96I13 439 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 OSBPL1AQ9BXW6 950 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 RABGEF1Q9UJ41 708 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 RIMKLBQ9ULI2 386 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ANK1P16157 1881 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 PRPF4O43172 522 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP54-215ENST00000497106 SYNCRIPO60506 623 aaKnown RBP8.45□□□□□ -1.06
USP54-215ENST00000497106 SOCS5O75159 536 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 USP12O75317 370 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ZNF7P17097 686 aaPredicted RBP8.45□□□□□ -1.06
USP54-215ENST00000497106 OGNP20774 298 aaKnown RBP8.45□□□□□ -1.06
USP54-215ENST00000497106 GRIA4P48058 902 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 TTPAP49638 278 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 SLC18A1P54219 525 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ZSCAN26Q16670 478 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 INSCQ1MX18 579 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ZNF697Q5TEC3 545 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 TRABD2AQ86V40 505 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 SUGP1Q8IWZ8 645 aaKnown RBP8.45□□□□□ -1.06
USP54-215ENST00000497106 CRIPAKQ8N1N5 446 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 NPWQ8N729 165 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 GLIS1Q8NBF1 620 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ATXN2LQ8WWM7 1075 aaKnown RBP8.45□□□□□ -1.06
USP54-215ENST00000497106 TRIM54Q9BYV2 358 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 RHOJQ9H4E5 214 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ZNF334Q9HCZ1 680 aaPredicted RBP8.45□□□□□ -1.06
USP54-215ENST00000497106 SLC39A10Q9ULF5 831 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ACOT9Q9Y305 439 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 MFHAS1Q9Y4C4 1052 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 VAPBO95292 243 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 PRNPP04156 253 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 MYL2P10916 166 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 COL6A2P12110 1019 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 POU4F1Q01851 419 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 C5orf22Q49AR2 442 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 HSP90AA5PQ58FG0 334 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 TSTD2Q5T7W7 516 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 STEAP4Q687X5 459 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 ARHGAP12Q8IWW6 846 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 VN1R2Q8NFZ6 395 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 RAB3IL1Q8TBN0 382 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 RDH11Q8TC12 318 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 GANCQ8TET4 914 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 SMARCD2Q92925 531 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 TCF12Q99081 682 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 SLC13A1Q9BZW2 595 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 SPHK2Q9NRA0 654 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 LMCD1Q9NZU5 365 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 CXXC1Q9P0U4 656 aaPredicted RBP8.45□□□□□ -1.06
USP54-215ENST00000497106 PHTF1Q9UMS5 762 aa8.45□□□□□ -1.06
USP54-215ENST00000497106 TTC3P53804 2025 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 RHOBTB1O94844 696 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 HSPA4LO95757 839 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 PRKCHP24723 683 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 GRK2P25098 689 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 MAXP61244 160 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 GEN1Q17RS7 908 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 C6orf163Q5TEZ5 329 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 ZNF470Q6ECI4 717 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 PTRHD1Q6GMV3 140 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 LVRNQ6Q4G3 990 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 PACS1Q6VY07 963 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 FRA10AC1Q70Z53 315 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 TRMT11Q7Z4G4 463 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 ZSCAN18Q8TBC5 510 aaPredicted RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 LRIG1Q96JA1 1093 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 KIFC1Q9BW19 673 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 TRMT6Q9UJA5 497 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 NPC1O15118 1278 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 SNX2O60749 519 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 SRP72O76094 671 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 ARL1P40616 181 aaPredicted RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 PTPN5P54829 565 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 SLC10A7Q0GE19 358 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 EIF4HQ15056 248 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 DUSP6Q16828 381 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 LILRA6Q6PI73 481 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 CERS6Q6ZMG9 384 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 MRPL38Q96DV4 380 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 SIKE1Q9BRV8 207 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 ZCCHC2Q9C0B9 1178 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 CLPBQ9H078 707 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 CRISPLD1Q9H336 500 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 FAM159BA6NKW6 160 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 STAMBPO95630 424 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 SRPRAP08240 638 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 CSNK1DP48730 415 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 GUCY1A3Q02108 690 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 ITGA9Q13797 1035 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 CARD16Q5EG05 197 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 LRRC8EQ6NSJ5 796 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 TMC5Q6UXY8 1006 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 SHKBP1Q8TBC3 707 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 PRMT1Q99873 361 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 HEPHQ9BQS7 1158 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 VN1R3Q9BXE9 311 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms