RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 MRPL47Q9HD33 250 aaKnown RBP23.29■■□□□ 1.32
COL9A3-213ENST00000489045 DNAJC28Q9NX36 388 aa23.29■■□□□ 1.32
COL9A3-213ENST00000489045 ARHGAP42A6NI28 874 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 SIGLEC6O43699 453 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 PIGNO95427 931 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 CDK4P11802 303 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 CKMT2P17540 419 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 ERCC2P18074 760 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 RABIFP47224 123 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 FZD2Q14332 565 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 ZNF542PQ5EBM4 170 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 KDM7AQ6ZMT4 941 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 TMPRSS12Q86WS5 348 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 DENND6BQ8NEG7 585 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 OR4C6Q8NH72 309 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 IFT43Q96FT9 208 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 CPEB1Q9BZB8 566 aaKnown RBP23.28■■□□□ 1.32
COL9A3-213ENST00000489045 DKK3Q9UBP4 350 aa23.28■■□□□ 1.32
COL9A3-213ENST00000489045 APC2O95996 2303 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 ACACAQ13085 2346 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 FAM208BQ5VWN6 2430 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 GOLGA6L19H0YKK7 550 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 FFAR2O15552 330 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 TIMP2P16035 220 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 ITIH2P19823 946 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 ZNF211Q13398 564 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-213ENST00000489045 CAMK2BQ13554 666 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 PSTKQ8IV42 348 aaKnown RBP23.27■■□□□ 1.32
COL9A3-213ENST00000489045 ARHGAP12Q8IWW6 846 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 NPWQ8N729 165 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 CXorf40AQ8TE69 158 aa23.27■■□□□ 1.32
COL9A3-213ENST00000489045 SYN2Q92777 582 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-213ENST00000489045 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.27■■□□□ 1.32
COL9A3-213ENST00000489045 SPTY2D1-AS1A0A0U1RR47 76 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 TRABD2BA6NFA1 517 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 MMP20O60882 483 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 PDE1CQ14123 709 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-213ENST00000489045 HS1BP3Q53T59 392 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 TPRG1LQ5T0D9 272 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 AFMIDQ63HM1 303 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 PARGQ86W56 976 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 CPLX3Q8WVH0 158 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 CWC15Q9P013 229 aaKnown RBP23.26■■□□□ 1.31
COL9A3-213ENST00000489045 BZW2Q9Y6E2 419 aaKnown RBP23.26■■□□□ 1.31
COL9A3-213ENST00000489045 KNTC1P50748 2209 aa23.26■■□□□ 1.31
COL9A3-213ENST00000489045 DFFAO00273 331 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 TM7SF2O76062 418 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 SERPING1P05155 500 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 GIMD1P0DJR0 217 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 TCF4P15884 667 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 XPAP23025 273 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-213ENST00000489045 ACP1P24666 158 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 IL1R2P27930 398 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 PCK1P35558 622 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 HNF1BP35680 557 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 IGFALSP35858 605 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 HCAR3P49019 387 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 ZNF135P52742 658 aaPredicted RBP23.25■■□□□ 1.31
COL9A3-213ENST00000489045 PFN3P60673 137 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 HNRNPKP61978 463 aaKnown RBP eCLIP23.25■■□□□ 1.31
COL9A3-213ENST00000489045 ZBED6P86452 979 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 ILKQ13418 452 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 DPYSQ14117 519 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 GRM3Q14832 879 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 HES3Q5TGS1 186 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 ARHGAP36Q6ZRI8 547 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 VPS36Q86VN1 386 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 CENPTQ96BT3 561 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 WRAP53Q9BUR4 548 aaKnown RBP23.25■■□□□ 1.31
COL9A3-213ENST00000489045 SP110Q9HB58 689 aa23.25■■□□□ 1.31
COL9A3-213ENST00000489045 IPO11Q9UI26 975 aaKnown RBP23.25■■□□□ 1.31
COL9A3-213ENST00000489045 ZFYVE26Q68DK2 2539 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 SHROOM3Q8TF72 1996 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 TSPAN11A1L157 253 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 PALMO75781 387 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 CSF2P04141 144 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 JUPP14923 745 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 RGRP47804 291 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 DAB2P98082 770 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 ACAP1Q15027 740 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 SMTNL2Q2TAL5 461 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 PDCD7Q8N8D1 485 aaKnown RBP23.24■■□□□ 1.31
COL9A3-213ENST00000489045 TSEN2Q8NCE0 465 aaKnown RBP23.24■■□□□ 1.31
COL9A3-213ENST00000489045 HCAR2Q8TDS4 363 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 THAP2Q9H0W7 228 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 SUV39H2Q9H5I1 410 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 ZWILCHQ9H900 591 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 NLGN3Q9NZ94 848 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 IFNKQ9P0W0 207 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 RALYQ9UKM9 306 aaKnown RBP23.24■■□□□ 1.31
COL9A3-213ENST00000489045 CAPN11Q9UMQ6 739 aa23.24■■□□□ 1.31
COL9A3-213ENST00000489045 ITPR1Q14643 2758 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 BUB1BO60566 1050 aaPredicted RBP23.23■■□□□ 1.31
COL9A3-213ENST00000489045 ALPPL2P10696 532 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 NME1P15531 152 aaKnown RBP23.23■■□□□ 1.31
COL9A3-213ENST00000489045 SUOXP51687 545 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 CYP4F3Q08477 520 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 ELP6Q0PNE2 266 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 DPYSL2Q16555 572 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 TMEM52BQ4KMG9 183 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms